Caitlyn McCafferty

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Caitlyn McCafferty

Cellular and molecular anatomy of cilia

Caitlyn McCafferty and her group will join the FMI in February 2027.

Eukaryotic cilia are microtubule-based organelles that project from the cell surface to drive motility, signaling, and sensing. Nearly all vertebrate cells are ciliated, bearing a primary cilium, while specialized epithelia cells are multiciliated, containing tens to hundreds of motile cilia for coordinated flow. The same cilia that cover vertebrate cells are structurally remarkably similar to those of unicellular organisms spanning eukaryotic clades, suggesting the last eukaryotic common ancestor bore a cilium. The conservation across evolution offers an opportunity to use structural cell biology to understand the similarity and nuances between species and develop general principles that exist across evolution.

Our lab will focus on understanding the cellular structural biology and dynamics of cilia. We will use a combination of in situ structural biology techniques in several model systems to address questions regarding how cells build and maintain cilia, the evolution of ciliary dynamics, ciliary adaptation and intracellular ciliary heterogeneity. Ultimately, we aim to connect these fundamental principles of ciliary biology to the mechanisms underlying ciliopathies — a diverse group of genetic disorders caused by defects in cilia structure or function, often affecting multiple organs and developmental processes.

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Caitlyn McCafferty

This is a list of selected publications from this group. For a full list of publications, please visit our Publications page and search by group name.


McCafferty, C. L., Brunet, M., van den Hoek, H., Buss, G., Mercey, O., Van der Stappen, P., ... & Engel, B. D (2026) Molecular architecture of the ciliary base in mammalian multiciliated cells

bioRxiv

Bertiaux, E., Louvel, V., McCafferty, C. L., Van Den Hoek, H., Batman, U., Mukherjee, S., ... & Guichard, P. (2025) The luminal ring protein C2CD3 acts as a radial in-to-out organizer of the distal centriole and appendages

PLoS Biology, 23(12), e3003519

McCafferty, C. L., Hoogerbrugge, G., Papoulas, O., Schwartz, E. A., Ritchey, S., Taylor, D. W., ... & Marcotte, E. M. (2025) The CAGE complex: a hollow, megadalton, protein assembly in prokaryotic and eukaryotic microbes

bioRxiv

McCafferty, C. L., Papoulas, O., Lee, C., Bui, K. H., Taylor, D. W., Marcotte, E. M., & Wallingford, J. B. (2025) An amino acid-resolution interactome for motile cilia identifies the structure and function of ciliopathy protein complexes

Developmental cell, 60(6), 965-978

McCafferty, C. L., Klumpe, S., Amaro, R. E., Kukulski, W., Collinson, L., & Engel, B. D. (2024) Integrating cellular electron microscopy with multimodal data to explore biology across space and time

Cell, 187(3), 563-584

McCafferty, C. L., Papoulas, O., Jordan, M. A., Hoogerbrugge, G., Nichols, C., Pigino, G., Taylor, D. W., Wallingford, J., B., & Marcotte, E. M. (2022) Integrative modeling reveals the molecular architecture of the intraflagellar transport A (IFT-A) complex

eLife, 11, e81977

Full list of publications
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Members


Alumni

Education

2022
PhD Cell and Molecular Biology, University of Texas, Austin, USA
2015
Bachelor of Science in Chemistry, University of Maryland, College Park, USA

Positions held

2027-
Junior group leader, Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland
2023-2026
Postdoctoral Fellow, Biozentrum, Basel, Switzerland

Honors

2024-2026
SNSF Postdoctoral Fellowship
2021
Marion Elizabeth Eason Endowed Scholarship
2019-2022
Dean's Prestigious Fellowship
2019-2022
SNSF Graduate Fellowship