The FMI publishes over 100 articles per year in peer-reviewed publications. In 2021, our researchers authored 116 scientific publications, including 60 in journals with Impact Factor >10.

Most Cited 20 FMI Publications

PUBLICATION SEARCH

The list below features all the scientific publications (articles and reviews only) in which an FMI group leader is listed PLUS the first or the last author is from the FMI, in chronological order starting with the most recent publications. You can browse the list by the name of the group leader and/or by the year.

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Groups & Date	Authors	Title & Journal
Schuebeler, D. Jul 12, 2022	Isbel L, Grand RS, Schübeler D	Generating specificity in genome regulation through transcription factor sensitivity to chromatin. Nat Rev Genet. 2022 Jul 12
Turco, M. Jul 01, 2022	Burton GJ, Turco MY	Joan Hunt Senior award lecture: New tools to shed light on the 'black box' of pregnancy. Placenta. 2022 Jul;125:54-60
Caroni, P. Jun 28, 2022	Serrano M, Tripodi M, Caroni P	Strategy updating mediated by specific retrosplenial-parafascicular-basal ganglia networks. Curr Biol. 2022 Jun 28
Proteomics and protein analysis; Bentires-Alj, M. Jun 23, 2022	Amante RJ, Auf der Maur P, Richina V, Sethi A, Iesmantavicius V, Bonenfant D, Aceto N, Bentires-Alj M	Protein Tyrosine Phosphatase SHP2 Controls Interleukin-8 Expression in Breast Cancer Cells. J Mammary Gland Biol Neoplasia. 2022 Jun 23
Chao, J. Jun 22, 2022	Gómez-Puerta S, Ferrero R, Hochstoeger T, Zubiri I, Chao J, Aragón T, Voigt F	Live imaging of the co-translational recruitment of XBP1 mRNA to the ER and its processing by diffuse, non-polarized IRE1α. Elife. 2022 Jun 22;11
Computational Biology Jun 21, 2022	Hadziselimovic F, Verkauskas G, Stadler M	A novel role for CFTR interaction with LH and FGF in azoospermia and epididymal maldevelopment caused by cryptorchidism. Basic Clin Androl. 2022 Jun 21;32(1):10
Roska, B. Jun 15, 2022	Bharioke A, Munz M, Brignall A, Kosche G, Eizinger MF, Ledergerber N, Hillier D, Gross-Scherf B, Conzelmann KK, Macé E, Roska B	General anesthesia globally synchronizes activity selectively in layer 5 cortical pyramidal neurons. Neuron. 2022 Jun 15;110(12):2024-2040.e10
Rijli, F. Jun 7, 2022	Pumo GM, Kitazawa T, Rijli FM	Epigenetic and Transcriptional Regulation of Spontaneous and Sensory Activity Dependent Programs During Neuronal Circuit Development. Front Neural Circuits. 2022;16:911023
Grosshans, H. Jun 6, 2022	Stojanovski K, Großhans H, Towbin BD	Coupling of growth rate and developmental tempo reduces body size heterogeneity in C. elegans. Nat Commun. 2022 Jun 6;13(1):3132
Arber, S. Jun 01, 2022	Arber S, Costa RM	Networking brainstem and basal ganglia circuits for movement. Nat Rev Neurosci. 2022 Jun;23(6):342-360
Peters, A.; Cell sorting (FACS) Jun 01, 2022	Gill ME, Kohler H, Peters AHFM	Dual DNA staining enables isolation of multiple sub-types of post-replicative mouse male germ cells. Cytometry A. 2022 Jun;101(6):529-536
Peters, A. May 18, 2022	Kawamura YK, Peters AHFM	Maternal enzyme reprograms paternal DNA for healthy offspring. Nature. 2022 May;605(7911):621-622
Gasser, S.; Emeritus; Grosshans, H. May 13, 2022	Padeken J, Methot SP, Gasser SM	Establishment of H3K9-methylated heterochromatin and its functions in tissue differentiation and maintenance. Nat Rev Mol Cell Biol. 2022 May 13
Arber, S.; Caroni, P. May 4, 2022	Krüttner S, Falasconi A, Valbuena S, Galimberti I, Bouwmeester T, Arber S, Caroni P	Absence of familiarity triggers hallmarks of autism in mouse model through aberrant tail-of-striatum and prelimbic cortex signaling. Neuron. 2022 May 4;110(9):1468-1482.e5
Matthias, P.; Structural Biology Apr 26, 2022	Wang L, Moreira EA, Kempf G, Miyake Y, Oliveira Esteves BI, Fahmi A, Schaefer JV, Dreier B, Yamauchi Y, Alves MP, Plückthun A, Matthias P	Disrupting the HDAC6-ubiquitin interaction impairs infection by influenza and Zika virus and cellular stress pathways. Cell Rep. 2022 Apr 26;39(4):110736
Luethi, A. Apr 15, 2022	d'Aquin S, Szonyi A, Mahn M, Krabbe S, Gründemann J, Lüthi A	Compartmentalized dendritic plasticity during associative learning. Science. 2022 Apr 15;376(6590):eabf7052
Matthias, P.; Structural Biology Apr 15, 2022	Langousis G, Cavadini S, Boegholm N, Lorentzen E, Kempf G, Matthias P	Structure of the ciliogenesis-associated CPLANE complex. Sci Adv. 2022 Apr 15;8(15):eabn0832
Cell sorting (FACS); Functional Genomics; Giorgetti, L. Apr 13, 2022	Zuin J, Roth G, Zhan Y, Cramard J, Redolfi J, Piskadlo E, Mach P, Kryzhanovska M, Tihanyi G, Kohler H, Eder M, Leemans C, van Steensel B, Meister P, Smallwood S, Giorgetti L	Nonlinear control of transcription through enhancer-promoter interactions. Nature. 2022 Apr;604(7906):571-577
Tsiairis, C. Apr 2, 2022	Ferenc J, Tsiairis CD	Studying Mechanical Oscillations During Whole-Body Regeneration in Hydra. Methods Mol Biol. 2022;2450:619-633
Thoma, N. Mar 14, 2022	Pla-Prats C, Thomä NH	Quality control of protein complex assembly by the ubiquitin-proteasome system. Trends Cell Biol. 2022 Mar 14
Proteomics and protein analysis; Bleichert, F. Feb 25, 2022	Schmidt JM, Yang R, Kumar A, Hunker O, Seebacher J, Bleichert F	A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC center dot DNA center dot Cdc6. Nat Commun. 2022 Feb 25;13(1):1059
Schuebeler, D.; Computational Biology; Rijli, F. Feb 23, 2022	Machlab D, Burger L, Soneson C, Rijli FM, Schübeler D, Stadler MB	monaLisa: an R/Bioconductor package for identifying regulatory motifs. Bioinformatics. 2022 Feb 23
Keller, G. Feb 16, 2022	Widmer FC, O'Toole SM, Keller GB	NMDA receptors in visual cortex are necessary for normal visuomotor integration and skill learning. Elife. 2022 Feb 16;11
Gasser, S.; Proteomics and protein analysis; Emeritus Feb 01, 2022	Delaney CE, Methot SP, Kalck V, Seebacher J, Hess D, Gasser SM, Padeken J	SETDB1-like MET-2 promotes transcriptional silencing and development independently of its H3K9me-associated catalytic activity. Nat Struct Mol Biol. 2022 Feb;29(2):85-96
Rijli, F. Jan 31, 2022	Kitazawa T, Minoux M, Ducret S, Rijli FM	Different Ectopic Hoxa2 Expression Levels in Mouse Cranial Neural Crest Cells Result in Distinct Craniofacial Anomalies and Homeotic Phenotypes. J Dev Biol. 2022 Jan 31;10(1)
Rijli, F. Jan 31, 2022	Kitazawa Taro, Maryline Minoux, Sebastien Ducret, Filippo M. Rijli	Different Ectopic Hoxa2 Expression Levels in Mouse Cranial Neural Crest Cells Result in Distinct Craniofacial Anomalies and Homeotic Phenotypes J Dev Biol, Jan 2022
Zenke, F. Jan 25, 2022	Cramer B, Billaudelle S, Kanya S, Leibfried A, Grübl A, Karasenko V, Pehle C, Schreiber K, Stradmann Y, Weis J, Schemmel J, Zenke F	Surrogate gradients for analog neuromorphic computing. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4)
Luethi, A. Jan 7, 2022	Courtin J, Bitterman Y, Müller S, Hinz J, Hagihara KM, Müller C, Lüthi A	A neuronal mechanism for motivational control of behavior. Science. 2022 Jan 7;375(6576):eabg7277
Keller, G. Jan 01, 2022	Garner AR, Keller GB	A cortical circuit for audio-visual predictions. Nat Neurosci. 2022 Jan;25(1):98-105
Chao, J. Jan 01, 2022	Mateju D, Chao JA	Stress granules: regulators or by-products? FEBS J. 2022 Jan;289(2):363-373
Gasser, S.; Proteomics and protein analysis Dec 17, 2021	Challa K, Seebacher J, Gasser SM	Sucrose gradient chromatin enrichment for quantitative proteomics analysis in budding yeast. STAR Protoc. 2021 Dec 17;2(4):100825
Zenke, F. Dec 13, 2021	Wu YK, Zenke F	Nonlinear transient amplification in recurrent neural networks with short-term plasticity. Elife. 2021 Dec 13;10
Functional Genomics; Computational Biology; Tsiairis, C. Dec 10, 2021	Ferenc J, Papasaikas P, Ferralli J, Nakamura Y, Smallwood S, Tsiairis CD	Mechanical oscillations orchestrate axial patterning through Wnt activation in Hydra. Sci Adv. 2021 Dec 10;7(50):eabj6897
Thoma, N.; Structural Biology Nov 15, 2021	Mohamed WI, Schenk AD, Kempf G, Cavadini S, Basters A, Potenza A, Abdul Rahman W, Rabl J, Reichermeier K, Thomä NH	The CRL4<sup>DCAF1</sup> cullin-RING ubiquitin ligase is activated following a switch in oligomerization state. EMBO J. 2021 Nov 15;40(22):e108008
Gasser, S.; Cell sorting (FACS); Emeritus; Grosshans, H.; Computational Biology Nov 4, 2021	Methot SP, Padeken J, Brancati G, Zeller P, Delaney CE, Gaidatzis D, Kohler H, van Oudenaarden A, Großhans H, Gasser SM	H3K9me selectively blocks transcription factor activity and ensures differentiated tissue integrity. Nat Cell Biol. 2021 Nov;23(11):1163-1175
Turco, M. Nov 01, 2021	Sheridan MA, Zhao X, Fernando RC, Gardner L, Perez-Garcia V, Li Q, Marsh SGE, Hamilton R, Moffett A, Turco MY	Characterization of primary models of human trophoblast. Development. 2021 Nov 1;148(21)
Chao, J. Nov 01, 2021	Mitchell J, Chao JA	Single-molecule mRNA and translation imaging in neurons. Biochem Soc Trans. 2021 Nov 1;49(5):2221-2227
Liberali, P. Oct 18, 2021	Lukonin I, Zinner M, Liberali P	Organoids in image-based phenotypic chemical screens. Exp Mol Med. 2021 Oct;53(10):1495-1502
Liberali, P. Oct 01, 2021	Yang Q, Liberali P	Collective behaviours in organoids. Curr Opin Cell Biol. 2021 Oct;72:81-90
Gasser, S.; Emeritus Oct 01, 2021	Hurst V, Challa K, Shimada K, Gasser SM	Cytoskeleton integrity influences XRCC1 and PCNA dynamics at DNA damage. Mol Biol Cell. 2021 Oct 1;32(20):br6
Gasser, S.; Proteomics and protein analysis; Emeritus Sep 27, 2021	Hurst V, Challa K, Jonas F, Forey R, Sack R, Seebacher J, Schmid CD, Barkai N, Shimada K, Gasser SM, Poli J	A regulatory phosphorylation site on Mec1 controls chromatin occupancy of RNA polymerases during replication stress. EMBO J. 2021 Sep 27;:e108439
Betschinger, J. Sep 14, 2021	Waehle V, Ungricht R, Hoppe PS, Betschinger J	The tumor suppressor WT1 drives progenitor cell progression and epithelialization to prevent Wilms tumorigenesis in human kidney organoids. Stem Cell Reports. 2021 Sep 14;16(9):2107-2117
Friedrich, R. Sep 01, 2021	Rupprecht P, Carta S, Hoffmann A, Echizen M, Blot A, Kwan AC, Dan Y, Hofer SB, Kitamura K, Helmchen F, Friedrich RW	A database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging. Nat Neurosci. 2021 Sep;24(9):1324-1337
Gasser, S.; Emeritus; Protein structure Sep 01, 2021	Shimada K, Tsai-Pflugfelder M, Vijeh Motlagh ND, Delgoshaie N, Fuchs J, Gut H, Gasser SM	The stabilized Pol31-Pol3 interface counteracts Pol32 ablation with differential effects on repair. Life Sci Alliance. 2021 Sep;4(9)
Giorgetti, L. Aug 21, 2021	Zhan Y, Giorgetti L, Tiana G	Polymer Folding Simulations from Hi-C Data. Methods Mol Biol. 2022;2301:259-265
Arber, S. Aug 19, 2021	Ferreira-Pinto MJ, Kanodia H, Falasconi A, Sigrist M, Esposito MS, Arber S	Functional diversity for body actions in the mesencephalic locomotor region. Cell. 2021 Aug 19;184(17):4564-4578.e18
Schuebeler, D.; Proteomics and protein analysis; Functional Genomics; Thoma, N. Aug 01, 2021	Grand RS, Burger L, Gräwe C, Michael AK, Isbel L, Hess D, Hoerner L, Iesmantavicius V, Durdu S, Pregnolato M, Krebs AR, Smallwood SA, Thomä N, Vermeulen M, Schübeler D	BANP opens chromatin and activates CpG-island-regulated genes. Nature. 2021 Aug;596(7870):133-137
Schuebeler, D.; Proteomics and protein analysis; Functional Genomics; Betschinger, J. Aug 01, 2021	Olivieri D, Paramanathan S, Bardet AF, Hess D, Smallwood SA, Elling U, Betschinger J	The BTB-domain transcription factor ZBTB2 recruits chromatin remodelers and a histone chaperone during the exit from pluripotency. J Biol Chem. 2021 Aug;297(2):100947
Proteomics and protein analysis; Facility for Advanced Imaging and Microscopy; Chao, J.; Structural Biology Jul 23, 2021	Nörpel J, Cavadini S, Schenk AD, Graff-Meyer A, Hess D, Seebacher J, Chao JA, Bhaskar V.	Structure of the human C9orf72-SMCR8 complex reveals a multivalent protein interaction architecture. PLoS Biol. 2021 Jul 23;19(7):e3001344
Facility for Advanced Imaging and Microscopy; Chao, J.; Giorgetti, L. Jul 21, 2021	Eichenberger BT, Zhan Y, Rempfler M, Giorgetti L, Chao JA	deepBlink: threshold-independent detection and localization of diffraction-limited spots. Nucleic Acids Res. 2021 Jul 21;49(13):7292-7297
Thoma, N. Jul 15, 2021	Kozicka Z, Thomä NH	Haven't got a glue: Protein surface variation for the design of molecular glue degraders. Cell Chem Biol. 2021 Jul 15;28(7):1032-1047
Friedrich, R. Jul 8, 2021	Friedrich RW, Wanner AA	Dense Circuit Reconstruction to Understand Neuronal Computation: Focus on Zebrafish. Annu Rev Neurosci. 2021 Jul 8;44:275-293
Matthias, P. Jul 8, 2021	Moreira EA, Yamauchi Y, Matthias P	How Influenza Virus Uses Host Cell Pathways during Uncoating. Cells. 2021 Jul 8;10(7)
Thoma, N. Jul 8, 2021	Michael AK, Thomä NH	Reading the chromatinized genome. Cell. 2021 Jul 8;184(14):3599-3611
Luethi, A. Jul 6, 2021	Whittle N, Fadok J, MacPherson KP, Nguyen R, Botta P, Wolff SBE, Müller C, Herry C, Tovote P, Holmes A, Singewald N, Lüthi A, Ciocchi S	Central amygdala micro-circuits mediate fear extinction. Nat Commun. 2021 Jul 6;12(1):4156
Facility for Advanced Imaging and Microscopy; Liberali, P. Jul 01, 2021	Yang Q, Xue SL, Chan CJ, Rempfler M, Vischi D, Maurer-Gutierrez F, Hiiragi T, Hannezo E, Liberali P	Cell fate coordinates mechano-osmotic forces in intestinal crypt formation. Nat Cell Biol. 2021 Jul;23(7):733-744
Computational Biology; Buehler, M.; Structural Biology Jun 22, 2021	Shimada Y, Carl SH, Skribbe M, Flury V, Kuzdere T, Kempf G, Bühler M	An enhancer screen identifies new suppressors of small-RNA-mediated epigenetic gene silencing. PLoS Genet. 2021 Jun 22;17(6):e1009645
Proteomics and protein analysis; Grosshans, H.; Computational Biology Jun 3, 2021	Gudipati RK, Braun K, Gypas F, Hess D, Schreier J, Carl SH, Ketting RF, Großhans H	Protease-mediated processing of Argonaute proteins controls small RNA association. Mol Cell. 2021 Jun 3;81(11):2388-2402.e8
Bentires-Alj, M. Jun 2, 2021	Correia AL, Guimaraes JC, Auf der Maur P, De Silva D, Trefny MP, Okamoto R, Bruno S, Schmidt A, Mertz K, Volkmann K, Terracciano L, Zippelius A, Vetter M, Kurzeder C, Weber WP, Bentires-Alj M	Hepatic stellate cells suppress NK cell-sustained breast cancer dormancy. Nature. 2021 Jun;594(7864):566-571
Luethi, A. Jun 01, 2021	Hagihara KM, Bukalo O, Zeller M, Aksoy-Aksel A, Karalis N, Limoges A, Rigg T, Campbell T, Mendez A, Weinholtz C, Mahn M, Zweifel LS, Palmiter RD, Ehrlich I, Lüthi A, Holmes A	Intercalated amygdala clusters orchestrate a switch in fear state. Nature. 2021 Jun;594(7863):403-407
Matthias, P.; Cell sorting (FACS); Computational Biology May 27, 2021	Song S, Cao C, Choukrallah MA, Tang F, Christofori G, Kohler H, Wu F, Fodor BD, Frederiksen M, Willis SN, Jackson JT, Nutt SL, Dirnhofer S, Stadler MB, Matthias P	OBF1 and Oct factors control the germinal center transcriptional program. Blood. 2021 May 27;137(21):2920-2934
Luethi, A. May 19, 2021	Mahn M, Saraf-Sinik I, Patil P, Pulin M, Bitton E, Karalis N, Bruentgens F, Palgi S, Gat A, Dine J, Wietek J, Davidi I, Levy R, Litvin A, Zhou F, Sauter K, Soba P, Schmitz D, Lüthi A, Rost BR, Wiegert JS, Yizhar O	Efficient optogenetic silencing of neurotransmitter release with a mosquito rhodopsin. Neuron. 2021 May 19;109(10):1621-1635.e8
Grosshans, H.; Tsiairis, C. May 17, 2021	Tsiairis C, Großhans H	Gene expression oscillations in C. elegans underlie a new developmental clock. Curr Top Dev Biol. 2021;144:19-43
Gasser, S. May 01, 2021	Fuchs J, Cheblal A, Gasser SM	Underappreciated Roles of DNA Polymerase δ in Replication Stress Survival. Trends Genet. 2021 May;37(5):476-487
Peters, A.; Proteomics and protein analysis; Functional Genomics; Computational Biology; Betschinger, J. Apr 28, 2021	Olivieri D, Castelli E, Kawamura YK, Papasaikas P, Lukonin I, Rittirsch M, Hess D, Smallwood SA, Stadler MB, Peters AHFM, Betschinger J	Cooperation between HDAC3 and DAX1 mediates lineage restriction of embryonic stem cells. EMBO J. 2021 Apr 28;:e106818
Luethi, A. Apr 01, 2021	Fustiñana MS, Eichlisberger T, Bouwmeester T, Bitterman Y, Lüthi A	State-dependent encoding of exploratory behaviour in the amygdala. Nature. 2021 Apr;592(7853):267-271
Peters, A. Apr 01, 2021	Stäubli A, Peters AH	Mechanisms of maternal intergenerational epigenetic inheritance. Curr Opin Genet Dev. 2021 Apr;67:151-162
Facility for Advanced Imaging and Microscopy; Chao, J.; Structural Biology Apr 01, 2021	Bhaskar V, Desogus J, Graff-Meyer A, Schenk AD, Cavadini S, Chao JA	Dynamic association of human Ebp1 with the ribosome. RNA. 2021 Apr;27(4):411-419
Felsenberg, J. Apr 01, 2021	Felsenberg J	Changing memories on the fly: the neural circuits of memory re-evaluation in Drosophila melanogaster. Curr Opin Neurobiol. 2021 Apr;67:190-198
Zenke, F. Mar 26, 2021	Zenke F, Vogels TP	The Remarkable Robustness of Surrogate Gradient Learning for Instilling Complex Function in Spiking Neural Networks. Neural Comput. 2021 Mar 26;33(4):899-925
Computational Biology Mar 18, 2021	Hadziselimovic F, Verkauskas G, Stadler MB	Molecular clues in the regulation of mini-puberty involve neuronal DNA binding transcription factor NHLH2. Basic Clin Androl. 2021 Mar 18;31(1):6
Chao, J. Mar 16, 2021	Daniel Mateju Jeffrey A. Chao	Stress granules: Regulators or by-products? FASEB J, 16 March 2021
Chiquet-Ehrismann, R.; Histology/ Antibody/ FACS; Proteomics and protein analysis Mar 12, 2021	Hendaoui I, Lahmar A, Campo L, Mebarki S, Bichet S, Hess D, Degen M, Kchir N, Charrada-Ben Farhat L, Hefaiedh R, Ruiz C, Terracciano LM, Tucker RP, Hendaoui L, Chiquet-Ehrismann R	Tenascin-W Is a Novel Stromal Marker in Biliary Tract Cancers. Front Immunol. 2020;11:630139
Cell sorting (FACS); Computational Biology; Rijli, F. Mar 01, 2021	Kitazawa T, Machlab D, Joshi O, Maiorano N, Kohler H, Ducret S, Kessler S, Gezelius H, Soneson C, Papasaikas P, López-Bendito G, Stadler MB, Rijli FM	A unique bipartite Polycomb signature regulates stimulus-response transcription during development. Nat Genet. 2021 Mar;53(3):379-391
Schuebeler, D.; Computational Biology Mar 01, 2021	Iurlaro M, Stadler MB, Masoni F, Jagani Z, Galli GG, Schübeler D	Mammalian SWI/SNF continuously restores local accessibility to chromatin. Nat Genet. 2021 Mar;53(3):279-287
Gasser, S.; Proteomics and protein analysis Feb 18, 2021	Challa K, Schmid CD, Kitagawa S, Cheblal A, Iesmantavicius V, Seeber A, Amitai A, Seebacher J, Hauer MH, Shimada K, Gasser SM	Damage-induced chromatome dynamics link Ubiquitin ligase and proteasome recruitment to histone loss and efficient DNA repair. Mol Cell. 2021 Feb 18;81(4):811-829.e6
Zenke, F. Feb 17, 2021	Zenke F, Bohté SM, Clopath C, Comsa IM, Göltz J, Maass W, Masquelier T, Naud R, Neftci EO, Petrovici MA, Scherr F, Goodman DFM	Visualizing a joint future of neuroscience and neuromorphic engineering. Neuron. 2021 Feb 17;109(4):571-575
Arber, S. Feb 01, 2021	Ruder L, Schina R, Kanodia H, Valencia-Garcia S, Pivetta C, Arber S	A functional map for diverse forelimb actions within brainstem circuitry. Nature. 2021 Feb;590(7846):445-450
Computational Biology Jan 11, 2021	Soneson C, Srivastava A, Patro R, Stadler MB	Preprocessing choices affect RNA velocity results for droplet scRNA-seq data. PLoS Comput Biol. 2021 Jan 11;17(1):e1008585
Zenke, F. Jan 8, 2021	Friedemann Zenke, Emre O. Neftci	Brain-Inspired Learning on Neuromorphic Substrates. Proceedings of the IEEE, 8 Jan 2021
Gasser, S. Jan 7, 2021	Forey R, Barthe A, Tittel-Elmer M, Wery M, Barrault MB, Ducrot C, Seeber A, Krietenstein N, Szachnowski U, Skrzypczak M, Ginalski K, Rowicka M, Cobb JA, Rando OJ, Soutourina J, Werner M, Dubrana K, Gasser SM, Morillon A, Pasero P, Lengronne A, Poli J	A Role for the Mre11-Rad50-Xrs2 Complex in Gene Expression and Chromosome Organization. Mol Cell. 2021 Jan 7;81(1):183-197.e6
Gasser, S. Jan 01, 2021	Padeken J, Methot S, Zeller P, Delaney CE, Kalck V, Gasser SM	Argonaute NRDE-3 and MBT domain protein LIN-61 redundantly recruit an H3K9me3 HMT to prevent embryonic lethality and transposon expression. Genes Dev. 2021 Jan 1;35(1-2):82-101
Zenke, F. Dec 30, 2020	Cramer B, Stradmann Y, Schemmel J, Zenke F	The Heidelberg Spiking Data Sets for the Systematic Evaluation of Spiking Neural Networks. IEEE Trans Neural Netw Learn Syst. 2020 Dec 30;PP
Facility for Advanced Imaging and Microscopy; Chao, J.; Giorgetti, L. Dec 23, 2020	Mateju D, Eichenberger B, Voigt F, Eglinger J, Roth G, Chao JA	Single-Molecule Imaging Reveals Translation of mRNAs Localized to Stress Granules. Cell. 2020 Dec 23;183(7):1801-1812.e13
Keller, G. Dec 23, 2020	Jordan R, Keller GB	Opposing Influence of Top-down and Bottom-up Input on Excitatory Layer 2/3 Neurons in Mouse Primary Visual Cortex. Neuron. 2020 Dec 23;108(6):1194-1206.e5
Facility for Advanced Imaging and Microscopy; Liberali, P. Dec 01, 2020	Zinner M, Lukonin I, Liberali P	Design principles of tissue organisation: How single cells coordinate across scales. Curr Opin Cell Biol. 2020 Dec;67:37-45
Chao, J. Dec 01, 2020	Dave P, Chao JA	Insights into mRNA degradation from single-molecule imaging in living cells. Curr Opin Struct Biol. 2020 Dec;65:89-95
Matthias, P.; Proteomics and protein analysis Nov 18, 2020	Saito M, Iestamantavicius V, Hess D, Matthias P	Monitoring Acetylation of the RNA Helicase DDX3X, a Protein Critical for Formation of Stress Granules. Methods Mol Biol. 2021;2209:217-234
Thoma, N.; Structural Biology Nov 01, 2020	Pathare GR, Decout A, Glück S, Cavadini S, Makasheva K, Hovius R, Kempf G, Weiss J, Kozicka Z, Guey B, Melenec P, Fierz B, Thomä NH, Ablasser A	Structural mechanism of cGAS inhibition by the nucleosome. Nature. 2020 Nov;587(7835):668-672
Gasser, S. Oct 15, 2020	Cheblal A, Challa K, Seeber A, Shimada K, Yoshida H, Ferreira HC, Amitai A, Gasser SM	DNA Damage-Induced Nucleosome Depletion Enhances Homology Search Independently of Local Break Movement. Mol Cell. 2020 Oct 15;80(2):311-326.e4
Facility for Advanced Imaging and Microscopy; Computational Biology; Liberali, P. Oct 7, 2020	Lukonin I, Serra D, Challet Meylan L, Volkmann K, Baaten J, Zhao R, Meeusen S, Colman K, Maurer F, Stadler MB, Jenkins J, Liberali P	Phenotypic landscape of intestinal organoid regeneration. Nature. 2020 Oct;586(7828):275-280
Computational Biology Sep 26, 2020	Soneson C, Marini F, Geier F, Love MI, Stadler MB	ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R. F1000Res. 2020;9:512
Roska, B.; Computational Biology Sep 17, 2020	Cowan CS, Renner M, De Gennaro M, Gross-Scherf B, Goldblum D, Hou Y, Munz M, Rodrigues TM, Krol J, Szikra T, Cuttat R, Waldt A, Papasaikas P, Diggelmann R, Patino-Alvarez CP, Galliker P, Spirig SE, Pavlinic D, Gerber-Hollbach N, Schuierer S, Srdanovic A, Balogh M, Panero R, Kusnyerik A, Szabo A, Stadler MB, Orgül S, Picelli S, Hasler PW, Hierlemann A, Scholl HPN, Roma G, Nigsch F, Roska B	Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution. Cell. 2020 Sep 17;182(6):1623-1640.e34
Thoma, N. Aug 01, 2020	Kassube SA, Thomä NH	Structural insights into Fe-S protein biogenesis by the CIA targeting complex. Nat Struct Mol Biol. 2020 Aug;27(8):735-742
Gasser, S.; Rass, U.; Diss, G. Jul 27, 2020	Falquet B, Ölmezer G, Enkner F, Klein D, Challa K, Appanah R, Gasser SM, Rass U	Disease-associated DNA2 nuclease-helicase protects cells from lethal chromosome under-replication. Nucleic Acids Res. 2020 Jul 27;48(13):7265-7278
Facility for Advanced Imaging and Microscopy; Grosshans, H.; Tsiairis, C. Jul 01, 2020	Meeuse MW, Hauser YP, Morales Moya LJ, Hendriks GJ, Eglinger J, Bogaarts G, Tsiairis C, Großhans H	Developmental function and state transitions of a gene expression oscillator in Caenorhabditis elegans. Mol Syst Biol. 2020 Jul;16(7):e9498
Peters, A.; Facility for Advanced Imaging and Microscopy Jul 01, 2020	Liu Z, Tardat M, Gill ME, Royo H, Thierry R, Ozonov EA, Peters AH	SUMOylated PRC1 controls histone H3.3 deposition and genome integrity of embryonic heterochromatin. EMBO J. 2020 Jul 1;39(13):e103697
Schuebeler, D.; Facility for Advanced Imaging and Microscopy; Thoma, N.; Structural Biology Jun 26, 2020	Michael AK, Grand RS, Isbel L, Cavadini S, Kozicka Z, Kempf G, Bunker RD, Schenk AD, Graff-Meyer A, Pathare GR, Weiss J, Matsumoto S, Burger L, Schübeler D, Thomä NH	Mechanisms of OCT4-SOX2 motif readout on nucleosomes. Science. 2020 Jun 26;368(6498):1460-1465
Computational Biology; Buehler, M. Jun 23, 2020	Carl SH, Duempelmann L, Shimada Y, Bühler M	A fully automated deep learning pipeline for high-throughput colony segmentation and classification. Biol Open. 2020 Jun 23;9(6)
Arber, S.; Cell sorting (FACS); Rijli, F. Jun 16, 2020	Maheshwari U, Kraus D, Vilain N, Holwerda SJB, Cankovic V, Maiorano NA, Kohler H, Satoh D, Sigrist M, Arber S, Kratochwil CF, Di Meglio T, Ducret S, Rijli FM	Postmitotic Hoxa5 Expression Specifies Pontine Neuron Positional Identity and Input Connectivity of Cortical Afferent Subsets. Cell Rep. 2020 Jun 16;31(11):107767
Roska, B. Jun 5, 2020	Nelidova D, Morikawa RK, Cowan CS, Raics Z, Goldblum D, Scholl HPN, Szikra T, Szabo A, Hillier D, Roska B	Restoring light sensitivity using tunable near-infrared sensors. Science. 2020 Jun 5;368(6495):1108-1113
Schuebeler, D.; Peters, A.; Functional Genomics; Computational Biology May 29, 2020	Ginno PA, Gaidatzis D, Feldmann A, Hoerner L, Imanci D, Burger L, Zilbermann F, Peters AHFM, Edenhofer F, Smallwood SA, Krebs AR, Schübeler D	A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity. Nat Commun. 2020 May 29;11(1):2680
Thoma, N.; Structural Biology May 26, 2020	Schenk AD, Cavadini S, Thomä NH, Genoud C	Live Analysis and Reconstruction of Single-Particle Cryo-Electron Microscopy Data with CryoFLARE J Chem Inf Model. 2020 May 26;60(5):2561-2569
Gasser, S.; Grosshans, H.; Computational Biology May 01, 2020	Mattout A, Gaidatzis D, Padeken J, Schmid CD, Aeschimann F, Kalck V, Gasser SM	LSM2-8 and XRN-2 contribute to the silencing of H3K27me3-marked genes through targeted RNA decay. Nat Cell Biol. 2020 May;22(5):579-590
Gasser, S.; Computational Biology Apr 29, 2020	Mattout A, Gaidatzis D, Kalck V, Gasser SM	A Nuclear RNA Degradation Pathway Helps Silence Polycomb/H3K27me3-Marked Loci in Caenorhabditis elegans. Cold Spring Harb Symp Quant Biol. 2020 Apr 29
Facility for Advanced Imaging and Microscopy; Computational Biology; Chao, J.; Structural Biology Apr 7, 2020	Bhaskar V, Graff-Meyer A, Schenk AD, Cavadini S, von Loeffelholz O, Natchiar SK, Artus-Revel CG, Hotz HR, Bretones G, Klaholz BP, Chao JA	Dynamics of uS19 C-Terminal Tail during the Translation Elongation Cycle in Human Ribosomes. Cell Rep. 2020 Apr 7;31(1):107473
Gasser, S. Apr 01, 2020	Harr JC, Schmid CD, Muñoz-Jiménez C, Romero-Bueno R, Kalck V, Gonzalez-Sandoval A, Hauer MH, Padeken J, Askjaer P, Mattout A, Gasser SM	Loss of an H3K9me anchor rescues laminopathy-linked changes in nuclear organization and muscle function in an Emery-Dreifuss muscular dystrophy model. Genes Dev. 2020 Apr 1;34(7-8):560-579
Grosshans, H. Mar 30, 2020	Azzi C, Aeschimann F, Neagu A, Großhans H	A branched heterochronic pathway directs juvenile-to-adult transition through two LIN-29 isoforms. Elife. 2020 Mar 30;9
Proteomics and protein analysis; Buehler, M. Mar 19, 2020	Tuck AC, Rankova A, Arpat AB, Liechti LA, Hess D, Iesmantavicius V, Castelo-Szekely V, Gatfield D, Bühler M	Mammalian RNA Decay Pathways Are Highly Specialized and Widely Linked to Translation. Mol Cell. 2020 Mar 19;77(6):1222-1236.e13
Friedrich, R. Mar 2, 2020	Huang KH, Rupprecht P, Frank T, Kawakami K, Bouwmeester T, Friedrich RW	A virtual reality system to analyze neural activity and behavior in adult zebrafish. Nat Methods. 2020 Mar;17(3):343-351
Friedrich, R. Mar 01, 2020	Wanner AA, Friedrich RW	Whitening of odor representations by the wiring diagram of the olfactory bulb. Nat Neurosci. 2020 Mar;23(3):433-442
Buehler, M. Mar 01, 2020	Duempelmann L, Skribbe M, Bühler M	Small RNAs in the Transgenerational Inheritance of Epigenetic Information. Trends Genet. 2020 Mar;36(3):203-214
Giorgetti, L. Feb 20, 2020	McCord RP, Kaplan N, Giorgetti L	Chromosome Conformation Capture and Beyond: Toward an Integrative View of Chromosome Structure and Function. Mol Cell. 2020 Feb 20;77(4):688-708
Proteomics and protein analysis; Facility for Advanced Imaging and Microscopy; Computational Biology; Betschinger, J. Jan 15, 2020	Mayer D, Stadler MB, Rittirsch M, Hess D, Lukonin I, Winzi M, Smith A, Buchholz F, Betschinger J	Zfp281 orchestrates interconversion of pluripotent states by engaging Ehmt1 and Zic2 EMBO J. 2020 Jan 15;39(2):e102591
Computational Biology Jan 01, 2020	Hadziselimovic F, Verkauskas G, Vincel B, Stadler MB	Testicular expression of long non-coding RNAs is affected by curative GnRHa treatment of cryptorchidism Basic Clin Androl. 2019;29:18
Bleichert, F. Dec 01, 2019	Bleichert F	Mechanisms of replication origin licensing: a structural perspective Curr Opin Struct Biol. 2019 Dec;59:195-204
Zenke, F. Nov 01, 2019	Neftci Emre O, Mostafa Hesham, Zenke Friedemann	Surrogate Gradient Learning in Spiking Neural Networks: Bringing the Power of Gradient-based optimization to spiking neural networks IEEE Signal Processing Magazine (Volume: 36 , Issue: 6 , Nov. 2019)
Tsiairis, C. Nov 01, 2019	Vogg MC, Galliot B, Tsiairis CD	Model systems for regeneration: Hydra Development. 2019 Nov 1;146(21)
Luethi, A. Nov 01, 2019	Krabbe S, Paradiso E, d'Aquin S, Bitterman Y, Courtin J, Xu C, Yonehara K, Markovic M, Müller C, Eichlisberger T, Gründemann J, Ferraguti F, Lüthi A	Adaptive disinhibitory gating by VIP interneurons permits associative learning. Nat Neurosci. 2019 Nov;22(11):1834-1843
Friedrich, R. Nov 01, 2019	Frank T, Mönig NR, Satou C, Higashijima SI, Friedrich RW	Associative conditioning remaps odor representations and modifies inhibition in a higher olfactory brain area Nat Neurosci. 2019 Nov;22(11):1844-1856
Gasser, S.; Proteomics and protein analysis; Protein structure Oct 15, 2019	Deshpande I, Keusch JJ, Challa K, Iesmantavicius V, Gasser SM, Gut H	The Sir4 H-BRCT domain interacts with phospho-proteins to sequester and repress yeast heterochromatin EMBO J. 2019 Oct 15;38(20):e101744
Rijli, F. Sep 26, 2019	Kratochwil CF, Rijli FM	The Cre/Lox System to Assess the Development of the Mouse Brain. Methods Mol Biol. 2020;2047:491-512
Bleichert, F. Sep 12, 2019	Ekundayo B, Bleichert F	Origins of DNA replication PLoS Genet. 2019 Sep;15(9):e1008320
Buehler, M. Sep 5, 2019	Kaaij LJT, Mohn F, van der Weide RH, de Wit E, Bühler M	The ChAHP Complex Counteracts Chromatin Looping at CTCF Sites that Emerged from SINE Expansions in Mouse. Cell. 2019 Sep 5;178(6):1437-1451.e14
Caroni, P. Sep 5, 2019	Mukherjee A, Carvalho F, Eliez S, Caroni P	Long-Lasting Rescue of Network and Cognitive Dysfunction in a Genetic Schizophrenia Model Cell. 2019 Sep 5;178(6):1387-1402.e14
Grosshans, H.; Computational Biology; Buehler, M. Sep 01, 2019	Welte T, Tuck AC, Papasaikas P, Carl SH, Flemr M, Knuckles P, Rankova A, Bühler M, Großhans H	The RNA hairpin binder TRIM71 modulates alternative splicing by repressing MBNL1 Genes Dev. 2019 Sep 1;33(17-18):1221-1235
Chiquet-Ehrismann, R. Aug 30, 2019	Schnellmann R, Chiquet-Ehrismann R	Preparation and Application of a Decellularized Extracellular Matrix for Identification of ADAMTS Substrates. Methods Mol Biol. 2020;2043:275-284
Facility for Advanced Imaging and Microscopy; Chao, J. Aug 14, 2019	Voigt F, Eglinger J, Chao JA	Quantification of mRNA Turnover in Living Cells: A Pipeline for TREAT Data Analysis. Methods Mol Biol. 2019;2038:75-88
Giorgetti, L. Aug 10, 2019	Tiana G, Giorgetti L	Coarse Graining of a Giant Molecular System: The Chromatin Fiber. Methods Mol Biol. 2019;2022:399-411
Peters, A.; Facility for Advanced Imaging and Microscopy; Thoma, N.; Structural Biology Aug 8, 2019	Rabl J, Bunker RD, Schenk AD, Cavadini S, Gill ME, Abdulrahman W, Andrés-Pons A, Luijsterburg MS, Ibrahim AFM, Branigan E, Aguirre JD, Marceau AH, Guérillon C, Bouwmeester T, Hassiepen U, Peters AHFM, Renatus M, Gelman L, Rubin SM, Mailand N, van Attikum H, Hay RT, Thomä NH	Structural Basis of BRCC36 Function in DNA Repair and Immune Regulation Mol Cell. 2019 Aug 8;75(3):483-497.e9
Schuebeler, D.; Roska, B. Aug 01, 2019	Jüttner J, Szabo A, Gross-Scherf B, Morikawa RK, Rompani SB, Hantz P, Szikra T, Esposti F, Cowan CS, Bharioke A, Patino-Alvarez CP, Keles Ö, Kusnyerik A, Azoulay T, Hartl D, Krebs AR, Schübeler D, Hajdu RI, Lukats A, Nemeth J, Nagy ZZ, Wu KC, Wu RH, Xiang L, Fang XL, Jin ZB, Goldblum D, Hasler PW, Scholl HPN, Krol J, Roska B	Targeting neuronal and glial cell types with synthetic promoter AAVs in mice, non-human primates and humans Nat Neurosci. 2019 Aug;22(8):1345-1356
Caroni, P. Jul 12, 2019	Chowdhury A, Caroni P	Author Correction: Time units for learning involving maintenance of system-wide cFos expression in neuronal assemblies Nat Commun. 2019 Jul 12;10(1):3083
Caroni, P. Jul 12, 2019	Mukherjee A, Caroni P	Author Correction: Infralimbic cortex is required for learning alternatives to prelimbic promoted associations through reciprocal connectivity. Nat Commun. 2019 Jul 12;10(1):3082
Caroni, P. Jul 9, 2019	Tripodi M, Bhandari K, Chowdhury A, Mukherjee A, Caroni P	Parvalbumin Interneuron Plasticity for Consolidation of Reinforced Learning. Cold Spring Harb Symp Quant Biol. 2019 Jul 9
Arber, S. Jul 8, 2019	Ruder L, Arber S	Brainstem Circuits Controlling Action Diversification Annu Rev Neurosci. 2019 Jul 8;42:485-504
Schuebeler, D.; Thoma, N.; Structural Biology Jul 01, 2019	Matsumoto S, Cavadini S, Bunker RD, Grand RS, Potenza A, Rabl J, Yamamoto J, Schenk AD, Schübeler D, Iwai S, Sugasawa K, Kurumizaka H, Thomä NH	DNA damage detection in nucleosomes involves DNA register shifting Nature. 2019 Jul;571(7763):79-84
Liberali, P. Jun 27, 2019	Mayr U, Serra D, Liberali P	Exploring single cells in space and time during tissue development, homeostasis and regeneration Development. 2019 Jun 27;146(12)
Proteomics and protein analysis; Thoma, N.; Rass, U. Jun 10, 2019	Fontana GA, Hess D, Reinert JK, Mattarocci S, Falquet B, Klein D, Shore D, Thomä NH, Rass U	Rif1 S-acylation mediates DNA double-strand break repair at the inner nuclear membrane Nat Commun. 2019 Jun 10;10(1):2535
Schuebeler, D.; Proteomics and protein analysis; Functional Genomics; Giorgetti, L. Jun 01, 2019	Redolfi J, Zhan Y, Valdes-Quezada C, Kryzhanovska M, Guerreiro I, Iesmantavicius V, Pollex T, Grand RS, Mulugeta E, Kind J, Tiana G, Smallwood SA, de Laat W, Giorgetti L	DamC reveals principles of chromatin folding in vivo without crosslinking and ligation Nat Struct Mol Biol. 2019 Jun;26(6):471-480
Gasser, S. Jun 01, 2019	Hurst V, Shimada K, Gasser SM	Nuclear Actin and Actin-Binding Proteins in DNA Repair Trends Cell Biol. 2019 Jun;29(6):462-476
Gasser, S.; Computational Biology May 22, 2019	Cabianca DS, Muñoz-Jiménez C, Kalck V, Gaidatzis D, Padeken J, Seeber A, Askjaer P, Gasser SM	Active chromatin marks drive spatial sequestration of heterochromatin in C. elegans nuclei Nature. 2019 May;569(7758):734-739
Buehler, M. May 2, 2019	Duempelmann L, Mohn F, Shimada Y, Oberti D, Andriollo A, Lochs S, Bühler M	Inheritance of a Phenotypically Neutral Epimutation Evokes Gene Silencing in Later Generations Mol Cell. 2019 May 2;74(3):534-541.e4
Facility for Advanced Imaging and Microscopy; Chao, J. May 01, 2019	Voigt F, Gerbracht JV, Boehm V, Horvathova I, Eglinger J, Chao JA, Gehring NH	Detection and quantification of RNA decay intermediates using XRN1-resistant reporter transcripts Nat Protoc. 2019 May;14(5):1603-1633
Peters, A.; Facility for Advanced Imaging and Microscopy; Computational Biology; Electron microscopy; Liberali, P. May 01, 2019	Serra D, Mayr U, Boni A, Lukonin I, Rempfler M, Challet Meylan L, Stadler MB, Strnad P, Papasaikas P, Vischi D, Waldt A, Roma G, Liberali P	Self-organization and symmetry breaking in intestinal organoid development Nature. 2019 May;569(7754):66-72
Schuebeler, D.; Computational Biology May 01, 2019	Barisic D, Stadler MB, Iurlaro M, Schübeler D	Mammalian ISWI and SWI/SNF selectively mediate binding of distinct transcription factors Nature. 2019 May;569(7754):136-140
Hohn, B. Apr 29, 2019	Hohn B	From Bacteriophage to Plant Genetics Annu Rev Plant Biol. 2019 Apr 29;70:1-22
Luethi, A. Apr 19, 2019	Gründemann J, Bitterman Y, Lu T, Krabbe S, Grewe BF, Schnitzer MJ, Lüthi A	Amygdala ensembles encode behavioral states Science. 2019 Apr 19;364(6437)
Gasser, S. Apr 19, 2019	Hurst V, Gasser SM	The study of protein recruitment to laser-induced DNA lesions can be distorted by photoconversion of the DNA binding dye Hoechst. F1000Res. 2019;8:104
Arber, S. Apr 2, 2019	Takeoka A, Arber S	Functional Local Proprioceptive Feedback Circuits Initiate and Maintain Locomotor Recovery after Spinal Cord Injury Cell Rep. 2019 Apr 2;27(1):71-85.e3
Grosshans, H. Apr 01, 2019	Aeschimann F, Neagu A, Rausch M, Großhans H	let-7 coordinates the transition to adulthood through a single primary and four secondary targets Life Sci Alliance. 2019 Apr;2(2)
Gasser, S.; Grosshans, H.; C. elegans facility Apr 01, 2019	Padeken J, Zeller P, Towbin B, Katic I, Kalck V, Methot SP, Gasser SM	Synergistic lethality between BRCA1 and H3K9me2 loss reflects satellite derepression Genes Dev. 2019 Apr 1;33(7-8):436-451
Schuebeler, D. Apr 01, 2019	Hartl D, Krebs AR, Grand RS, Baubec T, Isbel L, Wirbelauer C, Burger L, Schübeler D	CG dinucleotides enhance promoter activity independent of DNA methylation Genome Res. 2019 Apr;29(4):554-563
Liberali, P. Apr 01, 2019	Xavier da Silveira Dos Santos A, Liberali P	From single cells to tissue self-organization FEBS J. 2019 Apr;286(8):1495-1513
Cell sorting (FACS); Computational Biology; Bentires-Alj, M. Mar 13, 2019	Obradovic MMS, Hamelin B, Manevski N, Couto JP, Sethi A, Coissieux MM, Münst S, Okamoto R, Kohler H, Schmidt A, Bentires-Alj M	Glucocorticoids promote breast cancer metastasis Nature. 2019 Mar;567(7749):540-544
Chao, J.; Giorgetti, L. Mar 7, 2019	Wilbertz JH, Voigt F, Horvathova I, Roth G, Zhan Y, Chao JA	Single-Molecule Imaging of mRNA Localization and Regulation during the Integrated Stress Response Mol Cell. 2019 Mar 7;73(5):946-958.e7
Gasser, S.; C. elegans facility Mar 4, 2019	Delaney CE, Methot SP, Guidi M, Katic I, Gasser SM, Padeken J	Heterochromatic foci and transcriptional repression by an unstructured MET-2/SETDB1 co-factor LIN-65 J Cell Biol. 2019 Mar 4;218(3):820-838
Roska, B. Mar 01, 2019	Roska B	The first steps in vision: cell types, circuits, and repair EMBO Mol Med. 2019 Mar;11(3)
Proteomics and protein analysis; Functional Genomics; Computational Biology; Betschinger, J. Feb 7, 2019	Villegas F, Lehalle D, Mayer D, Rittirsch M, Stadler MB, Zinner M, Olivieri D, Vabres P, Duplomb-Jego L, De Bont ESJM, Duffourd Y, Duijkers F, Avila M, Geneviève D, Houcinat N, Jouan T, Kuentz P, Lichtenbelt KD, Thauvin-Robinet C, St-Onge J, Thevenon J, van Gassen KLI, van Haelst M, van Koningsbruggen S, Hess D, Smallwood SA, Rivière JB, Faivre L, Betschinger J	Lysosomal Signaling Licenses Embryonic Stem Cell Differentiation via Inactivation of Tfe3 Cell Stem Cell. 2019 Feb 7;24(2):257-270.e8
Matthias, P.; Proteomics and protein analysis; Facility for Advanced Imaging and Microscopy Jan 01, 2019	Saito M, Hess D, Eglinger J, Fritsch AW, Kreysing M, Weinert BT, Choudhary C, Matthias P	Acetylation of intrinsically disordered regions regulates phase separation Nat Chem Biol. 2019 Jan;15(1):51-61
Roska, B. Dec 5, 2018	Macé É, Montaldo G, Trenholm S, Cowan C, Brignall A, Urban A, Roska B	Whole-Brain Functional Ultrasound Imaging Reveals Brain Modules for Visuomotor Integration Neuron. 2018 Dec 5;100(5):1241-1251.e7
Chao, J. Dec 3, 2018	Chao JA, Lionnet T	Imaging the Life and Death of mRNAs in Single Cells Cold Spring Harb Perspect Biol. 2018 Dec 3;10(12)
Rijli, F. Dec 01, 2018	Kitazawa T, Rijli FM	Barrelette map formation in the prenatal mouse brainstem Curr Opin Neurobiol. 2018 Dec;53:210-219
Protein structure; Chao, J. Dec 01, 2018	Jia M, Gut H, Chao JA	Structural basis of IMP3 RRM12 recognition of RNA RNA. 2018 Dec;24(12):1659-1666
Gasser, S. Nov 23, 2018	Seeber A, Hauer MH, Gasser SM	Chromosome Dynamics in Response to DNA Damage Annu Rev Genet. 2018 Nov 23;52:295-319
Friedrich, R. Nov 7, 2018	Rupprecht P, Friedrich RW	Precise Synaptic Balance in the Zebrafish Homolog of Olfactory Cortex Neuron. 2018 Nov 7;100(3):669-683.e5
Thoma, N. Nov 2, 2018	Sievers QL, Petzold G, Bunker RD, Renneville A, Slabicki M, Liddicoat BJ, Abdulrahman W, Mikkelsen T, Ebert BL, Thomä NH	Defining the human C2H2 zinc finger degrome targeted by thalidomide analogs through CRBN Science. 2018 Nov 2;362(6414)
Friedrich, R. Nov 01, 2018	Namekawa I, Moenig NR, Friedrich RW	Rapid olfactory discrimination learning in adult zebrafish Exp Brain Res. 2018 Nov;236(11):2959-2969
Arber, S. Oct 24, 2018	Ferreira-Pinto MJ, Ruder L, Capelli P, Arber S	Connecting Circuits for Supraspinal Control of Locomotion. Neuron. 2018 Oct 24;100(2):361-374
Keller, G. Oct 24, 2018	Keller GB, Mrsic-Flogel TD	Predictive Processing: A Canonical Cortical Computation Neuron. 2018 Oct 24;100(2):424-435
Friedrich, R.; Electron microscopy Oct 17, 2018	Genoud C, Titze B, Graff-Meyer A, Friedrich RW	Fast Homogeneous En Bloc Staining of Large Tissue Samples for Volume Electron Microscopy. Front Neuroanat. 2018;12:76
Caroni, P. Oct 8, 2018	Chowdhury A, Caroni P	Time units for learning involving maintenance of system-wide cFos expression in neuronal assemblies Nat Commun. 2018 Oct 8;9(1):4122
Schuebeler, D.; Proteomics and protein analysis Oct 2, 2018	Ginno PA, Burger L, Seebacher J, Iesmantavicius V, Schübeler D	Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape Nat Commun. 2018 Oct 2;9(1):4048
Matthias, P. Sep 21, 2018	Song S, Matthias PD	The Transcriptional Regulation of Germinal Center Formation Front Immunol. 2018;9:2026
Arber, S.; Keller, G. Sep 5, 2018	Heindorf M, Arber S, Keller GB	Mouse Motor Cortex Coordinates the Behavioral Response to Unpredicted Sensory Feedback Neuron. 2018 Sep 5;99(5):1040-1054.e5
Gasser, S. Sep 4, 2018	Marcomini I, Shimada K, Delgoshaie N, Yamamoto I, Seeber A, Cheblal A, Horigome C, Naumann U, Gasser SM	Asymmetric Processing of DNA Ends at a Double-Strand Break Leads to Unconstrained Dynamics and Ectopic Translocation Cell Rep. 2018 Sep 4;24(10):2614-2628.e4
Buehler, M. Sep 01, 2018	Knuckles P, Bühler M	Adenosine methylation as a molecular imprint defining the fate of RNA. FEBS Lett. 2018 Sep;592(17):2845-2859
Friedrich, R.; Electron microscopy Aug 16, 2018	Titze B, Genoud C, Friedrich RW	SBEMimage: Versatile Acquisition Control Software for Serial Block-Face Electron Microscopy. Front Neural Circuits Front Neural Circuits. 2018;12:54
Transgenic mice production; Peters, A.; Computational Biology Aug 01, 2018	Stavropoulou V, Almosailleakh M, Royo H, Spetz JF, Juge S, Brault L, Kopp P, Iacovino M, Kyba M, Tzankov A, Stadler MB, Cazzaniga G, Peters AHFM, Schwaller J	A Novel Inducible Mouse Model of <em>MLL-ENL</em>-driven Mixed-lineage Acute Leukemia Hemasphere. 2018 Aug;2(4):e51
Buehler, M. Aug 01, 2018	Tuck AC, Natarajan KN, Rice GM, Borawski J, Mohn F, Rankova A, Flemr M, Wenger A, Nutiu R, Teichmann S, Bühler M	Distinctive features of lincRNA gene expression suggest widespread RNA-independent functions Life Sci Alliance. 2018 Aug;1(4):e201800124
Computational Biology Aug 01, 2018	Hadziselimovic F, Cathomas G, Verkauskas G, Dasevicius D, Stadler MB	PRDM Histone Methyltransferase mRNA Levels Increase in Response to Curative Hormone Treatment for Cryptorchidism-Dependent Male Infertility Genes (Basel). 2018 Aug 1;9(8)
Peters, A. Jul 30, 2018	Mark E.Gill, Antoine H.F.M.Peters	Chromatin Structure, Composition, and Function During Spermatogenesis Encyclopedia of Reproduction (Second Edition) Volume 3, 2018, Pages 85-89
Functional Genomics Jul 17, 2018	Peat JR, Smallwood SA	Low Input Whole-Genome Bisulfite Sequencing Using a Post-Bisulfite Adapter Tagging Approach. Methods Mol Biol. 2018;1708:161-169
Ciosk, R. Jul 16, 2018	Gutnik S, Thomas Y, Guo Y, Stoecklin J, Neagu A, Pintard L, Merlet J, Ciosk R	PRP-19, a conserved pre-mRNA processing factor and E3 ubiquitin ligase, inhibits the nuclear accumulation of GLP-1/Notch intracellular domain Biol Open. 2018 Jul 16;7(7)
Caroni, P. Jul 13, 2018	Mukherjee A, Caroni P	Infralimbic cortex is required for learning alternatives to prelimbic promoted associations through reciprocal connectivity. Nat Commun. 2018 Jul 13;9(1):2727
Roska, B. Jul 11, 2018	Drinnenberg A, Franke F, Morikawa RK, Jüttner J, Hillier D, Hantz P, Hierlemann A, Azeredo da Silveira R, Roska B	How Diverse Retinal Functions Arise from Feedback at the First Visual Synapse Neuron. 2018 Jul 11;99(1):117-134.e11
Luethi, A. Jul 10, 2018	Lavi K, Jacobson GA, Rosenblum K, Lüthi A	Encoding of Conditioned Taste Aversion in Cortico-Amygdala Circuits Cell Rep. 2018 Jul 10;24(2):278-283
Hynes, N.; Emeritus; Computational Biology Jul 01, 2018	Gattelli A, García Solá ME, Roloff TC, Cardiff RD, Kordon EC, Chodosh LA, Hynes NE	Chronic expression of wild-type Ret receptor in the mammary gland induces luminal tumors that are sensitive to Ret inhibition Oncogene. 2018 Jul;37(29):4046-4054
Chiquet-Ehrismann, R.; Proteomics and protein analysis; Emeritus Jul 01, 2018	Schnellmann R, Sack R, Hess D, Annis DS, Mosher DF, Apte SS, Chiquet-Ehrismann R	A Selective Extracellular Matrix Proteomics Approach Identifies Fibronectin Proteolysis by A Disintegrin-like and Metalloprotease Domain with Thrombospondin Type 1 Motifs (ADAMTS16) and Its Impact on Spheroid Morphogenesis Mol Cell Proteomics. 2018 Jul;17(7):1410-1425
Bleichert, F. Jun 26, 2018	Bleichert F, Leitner A, Aebersold R, Botchan MR, Berger JM	Conformational control and DNA-binding mechanism of the metazoan origin recognition complex Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):E5906-E5915
Friedrich, R.; Electron microscopy Jun 15, 2018	Miyasaka N, Wanner AA, Li J, Mack-Bucher J, Genoud C, Yoshihara Y, Friedrich RW	Functional development of the olfactory system in zebrafish. Mech Dev. 2013 Jun-Aug;130(6-8):336-46
Thoma, N. Jun 01, 2018	Bunker RD	Protein Crystallography: Challenges and Practical Solutions. Chapter 7: Structure Determination and Refinement of Large Macromolecular Assemblies at Low Resolution Royal Society of Chemistry
Proteomics and protein analysis; Computational Biology; Thoma, N.; Buehler, M.; Betschinger, J. May 23, 2018	Ostapcuk V, Mohn F, Carl SH, Basters A, Hess D, Iesmantavicius V, Lampersberger L, Flemr M, Pandey A, Thomä NH, Betschinger J, Bühler M	Activity-dependent neuroprotective protein recruits HP1 and CHD4 to control lineage-specifying genes. Nature. 2018 May;557(7707):739-743
Thoma, N.; Rass, U. May 17, 2018	Fontana GA, Reinert JK, Thomä NH, Rass U	Shepherding DNA ends: Rif1 protects telomeres and chromosome breaks Microb Cell. 2018 May 17;5(7):327-343
Roska, B. May 16, 2018	Roska B, Sahel JA	Restoring vision Nature. 2018 May;557(7705):359-367
Luethi, A. May 15, 2018	Krabbe S, Gründemann J, Lüthi A	Amygdala Inhibitory Circuits Regulate Associative Fear Conditioning. Biol Psychiatry. 2018 May 15;83(10):800-809
Grosshans, H. Apr 20, 2018	Brancati G, Großhans H	An interplay of miRNA abundance and target site architecture determines miRNA activity and specificity Nucleic Acids Res. 2018 Apr 20;46(7):3259-3269
Grosshans, H.; Ciosk, R.; Computational Biology; Protein structure Apr 19, 2018	Kumari P, Aeschimann F, Gaidatzis D, Keusch JJ, Ghosh P, Neagu A, Pachulska-Wieczorek K, Bujnicki JM, Gut H, Großhans H, Ciosk R	Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition Nat Commun. 2018 Apr 19;9(1):1549
Hemmings, B.; Hynes, N.; Animal facility; Cell sorting (FACS); Emeritus; Computational Biology; Keller, G. Apr 9, 2018	Moncayo G, Grzmil M, Smirnova T, Zmarz P, Huber RM, Hynx D, Kohler H, Wang Y, Hotz HR, Hynes NE, Keller G, Frank S, Merlo A, Hemmings BA	SYK inhibition blocks proliferation and migration of glioma cells and modifies the tumor microenvironment. Neuro Oncol. 2018 Apr 9;20(5):621-631
Giorgetti, L. Apr 01, 2018	Tiana G, Giorgetti L	Integrating experiment, theory and simulation to determine the structure and dynamics of mammalian chromosomes Curr Opin Struct Biol. 2018 Apr;49:11-17
Luethi, A. Apr 01, 2018	Fadok JP, Markovic M, Tovote P, Lüthi A	New perspectives on central amygdala function Curr Opin Neurobiol. 2018 Apr;49:141-147