The FMI publishes over 100 articles per year in peer-reviewed publications. In 2021, our researchers authored 116 scientific publications, including 60 in journals with Impact Factor >10.

Most Cited 20 FMI Publications

PUBLICATION SEARCH

The list below features all the scientific publications (articles and reviews only) in which an FMI group leader is listed PLUS the first or the last author is from the FMI, in chronological order starting with the most recent publications. You can browse the list by the name of the group leader and/or by the year.

Groups & Date Authors Title & Journal
Proteomics and protein analysis; Buehler, M.
Nov 21, 2022
Kuzdere T, Flury V, Schalch T, Iesmantavicius V, Hess D, Bühler M

Differential phosphorylation of Clr4(SUV39H) by Cdk1 accompanies a histone H3 methylation switch that is essential for gametogenesis.
EMBO Rep. 2022 Nov 21;:e55928

Matthias, P.; Structural Biology
Oct 19, 2022
Langousis G, Sanchez J, Kempf G, Matthias P

Expression and Crystallization of HDAC6 Tandem Catalytic Domains.
Methods Mol Biol. 2023;2589:467-480

Matthias, P.
Oct 19, 2022
Wang L, Sanchez J, Hess D, Matthias P

Immunoprecipitation of HDAC6 and Interacting Proteins.
Methods Mol Biol. 2023;2589:493-508

Bentires-Alj, M.
Sep 01, 2022
Vulin M, Jehanno C, Sethi A, Correia AL, Obradovic MMS, Couto JP, Coissieux MM, Diepenbruck M, Preca BT, Volkmann K, der Maur PA, Schmidt A, Münst S, Sauteur L, Kloc M, Palafox M, Britschgi A, Unterreiner V, Galuba O, Claerr I, Lopez-Romero S, Galli GG, Baeschlin D, Okamoto R, Soysal SD, Mechera R, Weber WP, Radimerski T, Bentires-Alj M

A high-throughput drug screen reveals means to differentiate triple-negative breast cancer.
Oncogene. 2022 Sep;41(39):4459-4473

Ciosk, R.
Aug 19, 2022
Pekec T, Lewandowski J, Komur AA, Sobanska D, Guo Y, Switonska-Kurkowska K, Malecki JM, Dubey AA, Pokrzywa W, Frankowski M, Figiel M, Ciosk R

Ferritin-mediated iron detoxification promotes hypothermia survival in Caenorhabditis elegans and murine neurons.
Nat Commun. 2022 Aug 19;13(1):4883

Liberali, P.
Aug 18, 2022
de Medeiros G, Ortiz R, Strnad P, Boni A, Moos F, Repina N, Challet Meylan L, Maurer F, Liberali P

Multiscale light-sheet organoid imaging framework.
Nat Commun. 2022 Aug 18;13(1):4864

Thoma, N.
Aug 01, 2022
Pla-Prats C, Thomä NH

Quality control of protein complex assembly by the ubiquitin-proteasome system.
Trends Cell Biol. 2022 Aug;32(8):696-706

Chao, J.; Giorgetti, L.
Jul 28, 2022
Piskadlo E, Eichenberger BT, Giorgetti L, Chao JA

Design, Labeling, and Application of Probes for RNA smFISH.
Methods Mol Biol. 2022;2537:173-183

Friedrich, R.; Keller, G.
Jul 22, 2022
Satou C, Neve RL, Oyibo HK, Zmarz P, Huang KH, Arn Bouldoires E, Mori T, Higashijima SI, Keller GB, Friedrich RW

A viral toolbox for conditional and transneuronal gene expression in zebrafish.
Elife. 2022 Jul 22;11

Schuebeler, D.
Jul 12, 2022
Isbel L, Grand RS, Schübeler D

Generating specificity in genome regulation through transcription factor sensitivity to chromatin.
Nat Rev Genet. 2022 Jul 12

Zenke, F.
Jul 6, 2022
Cramer B, Stradmann Y, Schemmel J, Zenke F

The Heidelberg Spiking Data Sets for the Systematic Evaluation of Spiking Neural Networks.
IEEE Trans Neural Netw Learn Syst. 2022 Jul;33(7):2744-2757

Turco, M.
Jul 01, 2022
Burton GJ, Turco MY

Joan Hunt Senior award lecture: New tools to shed light on the 'black box' of pregnancy.
Placenta. 2022 Jul;125:54-60

Caroni, P.
Jun 28, 2022
Serrano M, Tripodi M, Caroni P

Strategy updating mediated by specific retrosplenial-parafascicular-basal ganglia networks.
Curr Biol. 2022 Jun 28

Proteomics and protein analysis; Bentires-Alj, M.
Jun 23, 2022
Amante RJ, Auf der Maur P, Richina V, Sethi A, Iesmantavicius V, Bonenfant D, Aceto N, Bentires-Alj M

Protein Tyrosine Phosphatase SHP2 Controls Interleukin-8 Expression in Breast Cancer Cells.
J Mammary Gland Biol Neoplasia. 2022 Jun 23

Chao, J.
Jun 22, 2022
Gómez-Puerta S, Ferrero R, Hochstoeger T, Zubiri I, Chao J, Aragón T, Voigt F

Live imaging of the co-translational recruitment of XBP1 mRNA to the ER and its processing by diffuse, non-polarized IRE1α.
Elife. 2022 Jun 22;11

Computational Biology
Jun 21, 2022
Hadziselimovic F, Verkauskas G, Stadler M

A novel role for CFTR interaction with LH and FGF in azoospermia and epididymal maldevelopment caused by cryptorchidism.
Basic Clin Androl. 2022 Jun 21;32(1):10

Roska, B.
Jun 15, 2022
Bharioke A, Munz M, Brignall A, Kosche G, Eizinger MF, Ledergerber N, Hillier D, Gross-Scherf B, Conzelmann KK, Macé E, Roska B

General anesthesia globally synchronizes activity selectively in layer 5 cortical pyramidal neurons.
Neuron. 2022 Jun 15;110(12):2024-2040.e10

Rijli, F.
Jun 7, 2022
Pumo GM, Kitazawa T, Rijli FM

Epigenetic and Transcriptional Regulation of Spontaneous and Sensory Activity Dependent Programs During Neuronal Circuit Development.
Front Neural Circuits. 2022;16:911023

Grosshans, H.
Jun 6, 2022
Stojanovski K, Großhans H, Towbin BD

Coupling of growth rate and developmental tempo reduces body size heterogeneity in C. elegans.
Nat Commun. 2022 Jun 6;13(1):3132

Arber, S.
Jun 01, 2022
Arber S, Costa RM

Networking brainstem and basal ganglia circuits for movement.
Nat Rev Neurosci. 2022 Jun;23(6):342-360

Peters, A.; Cell sorting (FACS)
Jun 01, 2022
Gill ME, Kohler H, Peters AHFM

Dual DNA staining enables isolation of multiple sub-types of post-replicative mouse male germ cells.
Cytometry A. 2022 Jun;101(6):529-536

Peters, A.
May 18, 2022
Kawamura YK, Peters AHFM

Maternal enzyme reprograms paternal DNA for healthy offspring.
Nature. 2022 May;605(7911):621-622

Gasser, S.; Emeritus; Grosshans, H.
May 13, 2022
Padeken J, Methot SP, Gasser SM

Establishment of H3K9-methylated heterochromatin and its functions in tissue differentiation and maintenance.
Nat Rev Mol Cell Biol. 2022 May 13

Arber, S.; Caroni, P.
May 4, 2022
Krüttner S, Falasconi A, Valbuena S, Galimberti I, Bouwmeester T, Arber S, Caroni P

Absence of familiarity triggers hallmarks of autism in mouse model through aberrant tail-of-striatum and prelimbic cortex signaling.
Neuron. 2022 May 4;110(9):1468-1482.e5

Matthias, P.; Structural Biology
Apr 26, 2022
Wang L, Moreira EA, Kempf G, Miyake Y, Oliveira Esteves BI, Fahmi A, Schaefer JV, Dreier B, Yamauchi Y, Alves MP, Plückthun A, Matthias P

Disrupting the HDAC6-ubiquitin interaction impairs infection by influenza and Zika virus and cellular stress pathways.
Cell Rep. 2022 Apr 26;39(4):110736

Luethi, A.
Apr 15, 2022
d'Aquin S, Szonyi A, Mahn M, Krabbe S, Gründemann J, Lüthi A

Compartmentalized dendritic plasticity during associative learning.
Science. 2022 Apr 15;376(6590):eabf7052

Matthias, P.; Structural Biology
Apr 15, 2022
Langousis G, Cavadini S, Boegholm N, Lorentzen E, Kempf G, Matthias P

Structure of the ciliogenesis-associated CPLANE complex.
Sci Adv. 2022 Apr 15;8(15):eabn0832

Cell sorting (FACS); Functional Genomics; Giorgetti, L.
Apr 13, 2022
Zuin J, Roth G, Zhan Y, Cramard J, Redolfi J, Piskadlo E, Mach P, Kryzhanovska M, Tihanyi G, Kohler H, Eder M, Leemans C, van Steensel B, Meister P, Smallwood S, Giorgetti L

Nonlinear control of transcription through enhancer-promoter interactions.
Nature. 2022 Apr;604(7906):571-577

Tsiairis, C.
Apr 2, 2022
Ferenc J, Tsiairis CD

Studying Mechanical Oscillations During Whole-Body Regeneration in Hydra.
Methods Mol Biol. 2022;2450:619-633

Proteomics and protein analysis; Bleichert, F.
Feb 25, 2022
Schmidt JM, Yang R, Kumar A, Hunker O, Seebacher J, Bleichert F

A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC center dot DNA center dot Cdc6.
Nat Commun. 2022 Feb 25;13(1):1059

Schuebeler, D.; Computational Biology; Rijli, F.
Feb 23, 2022
Machlab D, Burger L, Soneson C, Rijli FM, Schübeler D, Stadler MB

monaLisa: an R/Bioconductor package for identifying regulatory motifs.
Bioinformatics. 2022 Feb 23

Keller, G.
Feb 16, 2022
Widmer FC, O'Toole SM, Keller GB

NMDA receptors in visual cortex are necessary for normal visuomotor integration and skill learning.
Elife. 2022 Feb 16;11

Gasser, S.; Proteomics and protein analysis; Emeritus
Feb 01, 2022
Delaney CE, Methot SP, Kalck V, Seebacher J, Hess D, Gasser SM, Padeken J

SETDB1-like MET-2 promotes transcriptional silencing and development independently of its H3K9me-associated catalytic activity.
Nat Struct Mol Biol. 2022 Feb;29(2):85-96

Rijli, F.
Jan 31, 2022
Kitazawa T, Minoux M, Ducret S, Rijli FM

Different Ectopic Hoxa2 Expression Levels in Mouse Cranial Neural Crest Cells Result in Distinct Craniofacial Anomalies and Homeotic Phenotypes.
J Dev Biol. 2022 Jan 31;10(1)

Rijli, F.
Jan 31, 2022
Kitazawa Taro, Maryline Minoux, Sebastien Ducret, Filippo M. Rijli

Different Ectopic Hoxa2 Expression Levels in Mouse Cranial Neural Crest Cells Result in Distinct Craniofacial Anomalies and Homeotic Phenotypes
J Dev Biol, Jan 2022

Zenke, F.
Jan 25, 2022
Cramer B, Billaudelle S, Kanya S, Leibfried A, Grübl A, Karasenko V, Pehle C, Schreiber K, Stradmann Y, Weis J, Schemmel J, Zenke F

Surrogate gradients for analog neuromorphic computing.
Proc Natl Acad Sci U S A. 2022 Jan 25;119(4)

Luethi, A.
Jan 7, 2022
Courtin J, Bitterman Y, Müller S, Hinz J, Hagihara KM, Müller C, Lüthi A

A neuronal mechanism for motivational control of behavior.
Science. 2022 Jan 7;375(6576):eabg7277

Keller, G.
Jan 01, 2022
Garner AR, Keller GB

A cortical circuit for audio-visual predictions.
Nat Neurosci. 2022 Jan;25(1):98-105

Chao, J.
Jan 01, 2022
Mateju D, Chao JA

Stress granules: regulators or by-products?
FEBS J. 2022 Jan;289(2):363-373

Gasser, S.; Proteomics and protein analysis
Dec 17, 2021
Challa K, Seebacher J, Gasser SM

Sucrose gradient chromatin enrichment for quantitative proteomics analysis in budding yeast.
STAR Protoc. 2021 Dec 17;2(4):100825

Zenke, F.
Dec 13, 2021
Wu YK, Zenke F

Nonlinear transient amplification in recurrent neural networks with short-term plasticity.
Elife. 2021 Dec 13;10

Functional Genomics; Computational Biology; Tsiairis, C.
Dec 10, 2021
Ferenc J, Papasaikas P, Ferralli J, Nakamura Y, Smallwood S, Tsiairis CD

Mechanical oscillations orchestrate axial patterning through Wnt activation in Hydra.
Sci Adv. 2021 Dec 10;7(50):eabj6897

Thoma, N.; Structural Biology
Nov 15, 2021
Mohamed WI, Schenk AD, Kempf G, Cavadini S, Basters A, Potenza A, Abdul Rahman W, Rabl J, Reichermeier K, Thomä NH

The CRL4<sup>DCAF1</sup> cullin-RING ubiquitin ligase is activated following a switch in oligomerization state.
EMBO J. 2021 Nov 15;40(22):e108008

Gasser, S.; Cell sorting (FACS); Emeritus; Grosshans, H.; Computational Biology
Nov 4, 2021
Methot SP, Padeken J, Brancati G, Zeller P, Delaney CE, Gaidatzis D, Kohler H, van Oudenaarden A, Großhans H, Gasser SM

H3K9me selectively blocks transcription factor activity and ensures differentiated tissue integrity.
Nat Cell Biol. 2021 Nov;23(11):1163-1175

Turco, M.
Nov 01, 2021
Sheridan MA, Zhao X, Fernando RC, Gardner L, Perez-Garcia V, Li Q, Marsh SGE, Hamilton R, Moffett A, Turco MY

Characterization of primary models of human trophoblast.
Development. 2021 Nov 1;148(21)

Chao, J.
Nov 01, 2021
Mitchell J, Chao JA

Single-molecule mRNA and translation imaging in neurons.
Biochem Soc Trans. 2021 Nov 1;49(5):2221-2227

Liberali, P.
Oct 18, 2021
Lukonin I, Zinner M, Liberali P

Organoids in image-based phenotypic chemical screens.
Exp Mol Med. 2021 Oct;53(10):1495-1502

Liberali, P.
Oct 01, 2021
Yang Q, Liberali P

Collective behaviours in organoids.
Curr Opin Cell Biol. 2021 Oct;72:81-90

Gasser, S.; Emeritus
Oct 01, 2021
Hurst V, Challa K, Shimada K, Gasser SM

Cytoskeleton integrity influences XRCC1 and PCNA dynamics at DNA damage.
Mol Biol Cell. 2021 Oct 1;32(20):br6

Gasser, S.; Proteomics and protein analysis; Emeritus
Sep 27, 2021
Hurst V, Challa K, Jonas F, Forey R, Sack R, Seebacher J, Schmid CD, Barkai N, Shimada K, Gasser SM, Poli J

A regulatory phosphorylation site on Mec1 controls chromatin occupancy of RNA polymerases during replication stress.
EMBO J. 2021 Sep 27;:e108439

Betschinger, J.
Sep 14, 2021
Waehle V, Ungricht R, Hoppe PS, Betschinger J

The tumor suppressor WT1 drives progenitor cell progression and epithelialization to prevent Wilms tumorigenesis in human kidney organoids.
Stem Cell Reports. 2021 Sep 14;16(9):2107-2117

Friedrich, R.
Sep 01, 2021
Rupprecht P, Carta S, Hoffmann A, Echizen M, Blot A, Kwan AC, Dan Y, Hofer SB, Kitamura K, Helmchen F, Friedrich RW

A database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging.
Nat Neurosci. 2021 Sep;24(9):1324-1337

Gasser, S.; Emeritus; Protein structure
Sep 01, 2021
Shimada K, Tsai-Pflugfelder M, Vijeh Motlagh ND, Delgoshaie N, Fuchs J, Gut H, Gasser SM

The stabilized Pol31-Pol3 interface counteracts Pol32 ablation with differential effects on repair.
Life Sci Alliance. 2021 Sep;4(9)

Giorgetti, L.
Aug 21, 2021
Zhan Y, Giorgetti L, Tiana G

Polymer Folding Simulations from Hi-C Data.
Methods Mol Biol. 2022;2301:259-265

Arber, S.
Aug 19, 2021
Ferreira-Pinto MJ, Kanodia H, Falasconi A, Sigrist M, Esposito MS, Arber S

Functional diversity for body actions in the mesencephalic locomotor region.
Cell. 2021 Aug 19;184(17):4564-4578.e18

Schuebeler, D.; Proteomics and protein analysis; Functional Genomics; Thoma, N.
Aug 01, 2021
Grand RS, Burger L, Gräwe C, Michael AK, Isbel L, Hess D, Hoerner L, Iesmantavicius V, Durdu S, Pregnolato M, Krebs AR, Smallwood SA, Thomä N, Vermeulen M, Schübeler D

BANP opens chromatin and activates CpG-island-regulated genes.
Nature. 2021 Aug;596(7870):133-137

Schuebeler, D.; Proteomics and protein analysis; Functional Genomics; Betschinger, J.
Aug 01, 2021
Olivieri D, Paramanathan S, Bardet AF, Hess D, Smallwood SA, Elling U, Betschinger J

The BTB-domain transcription factor ZBTB2 recruits chromatin remodelers and a histone chaperone during the exit from pluripotency.
J Biol Chem. 2021 Aug;297(2):100947

Proteomics and protein analysis; Facility for Advanced Imaging and Microscopy; Chao, J.; Structural Biology
Jul 23, 2021
Nörpel J, Cavadini S, Schenk AD, Graff-Meyer A, Hess D, Seebacher J, Chao JA, Bhaskar V.

Structure of the human C9orf72-SMCR8 complex reveals a multivalent protein interaction architecture.
PLoS Biol. 2021 Jul 23;19(7):e3001344

Facility for Advanced Imaging and Microscopy; Chao, J.; Giorgetti, L.
Jul 21, 2021
Eichenberger BT, Zhan Y, Rempfler M, Giorgetti L, Chao JA

deepBlink: threshold-independent detection and localization of diffraction-limited spots.
Nucleic Acids Res. 2021 Jul 21;49(13):7292-7297

Thoma, N.
Jul 15, 2021
Kozicka Z, Thomä NH

Haven't got a glue: Protein surface variation for the design of molecular glue degraders.
Cell Chem Biol. 2021 Jul 15;28(7):1032-1047

Friedrich, R.
Jul 8, 2021
Friedrich RW, Wanner AA

Dense Circuit Reconstruction to Understand Neuronal Computation: Focus on Zebrafish.
Annu Rev Neurosci. 2021 Jul 8;44:275-293

Matthias, P.
Jul 8, 2021
Moreira EA, Yamauchi Y, Matthias P

How Influenza Virus Uses Host Cell Pathways during Uncoating.
Cells. 2021 Jul 8;10(7)

Thoma, N.
Jul 8, 2021
Michael AK, Thomä NH

Reading the chromatinized genome.
Cell. 2021 Jul 8;184(14):3599-3611

Luethi, A.
Jul 6, 2021
Whittle N, Fadok J, MacPherson KP, Nguyen R, Botta P, Wolff SBE, Müller C, Herry C, Tovote P, Holmes A, Singewald N, Lüthi A, Ciocchi S

Central amygdala micro-circuits mediate fear extinction.
Nat Commun. 2021 Jul 6;12(1):4156

Facility for Advanced Imaging and Microscopy; Liberali, P.
Jul 01, 2021
Yang Q, Xue SL, Chan CJ, Rempfler M, Vischi D, Maurer-Gutierrez F, Hiiragi T, Hannezo E, Liberali P

Cell fate coordinates mechano-osmotic forces in intestinal crypt formation.
Nat Cell Biol. 2021 Jul;23(7):733-744

Computational Biology; Buehler, M.; Structural Biology
Jun 22, 2021
Shimada Y, Carl SH, Skribbe M, Flury V, Kuzdere T, Kempf G, Bühler M

An enhancer screen identifies new suppressors of small-RNA-mediated epigenetic gene silencing.
PLoS Genet. 2021 Jun 22;17(6):e1009645

Proteomics and protein analysis; Grosshans, H.; Computational Biology
Jun 3, 2021
Gudipati RK, Braun K, Gypas F, Hess D, Schreier J, Carl SH, Ketting RF, Großhans H

Protease-mediated processing of Argonaute proteins controls small RNA association.
Mol Cell. 2021 Jun 3;81(11):2388-2402.e8

Bentires-Alj, M.
Jun 2, 2021
Correia AL, Guimaraes JC, Auf der Maur P, De Silva D, Trefny MP, Okamoto R, Bruno S, Schmidt A, Mertz K, Volkmann K, Terracciano L, Zippelius A, Vetter M, Kurzeder C, Weber WP, Bentires-Alj M

Hepatic stellate cells suppress NK cell-sustained breast cancer dormancy.
Nature. 2021 Jun;594(7864):566-571

Luethi, A.
Jun 01, 2021
Hagihara KM, Bukalo O, Zeller M, Aksoy-Aksel A, Karalis N, Limoges A, Rigg T, Campbell T, Mendez A, Weinholtz C, Mahn M, Zweifel LS, Palmiter RD, Ehrlich I, Lüthi A, Holmes A

Intercalated amygdala clusters orchestrate a switch in fear state.
Nature. 2021 Jun;594(7863):403-407

Matthias, P.; Cell sorting (FACS); Computational Biology
May 27, 2021
Song S, Cao C, Choukrallah MA, Tang F, Christofori G, Kohler H, Wu F, Fodor BD, Frederiksen M, Willis SN, Jackson JT, Nutt SL, Dirnhofer S, Stadler MB, Matthias P

OBF1 and Oct factors control the germinal center transcriptional program.
Blood. 2021 May 27;137(21):2920-2934

Luethi, A.
May 19, 2021
Mahn M, Saraf-Sinik I, Patil P, Pulin M, Bitton E, Karalis N, Bruentgens F, Palgi S, Gat A, Dine J, Wietek J, Davidi I, Levy R, Litvin A, Zhou F, Sauter K, Soba P, Schmitz D, Lüthi A, Rost BR, Wiegert JS, Yizhar O

Efficient optogenetic silencing of neurotransmitter release with a mosquito rhodopsin.
Neuron. 2021 May 19;109(10):1621-1635.e8

Grosshans, H.; Tsiairis, C.
May 17, 2021
Tsiairis C, Großhans H

Gene expression oscillations in C. elegans underlie a new developmental clock.
Curr Top Dev Biol. 2021;144:19-43

Gasser, S.
May 01, 2021
Fuchs J, Cheblal A, Gasser SM

Underappreciated Roles of DNA Polymerase &delta; in Replication Stress Survival.
Trends Genet. 2021 May;37(5):476-487

Peters, A.; Proteomics and protein analysis; Functional Genomics; Computational Biology; Betschinger, J.
Apr 28, 2021
Olivieri D, Castelli E, Kawamura YK, Papasaikas P, Lukonin I, Rittirsch M, Hess D, Smallwood SA, Stadler MB, Peters AHFM, Betschinger J

Cooperation between HDAC3 and DAX1 mediates lineage restriction of embryonic stem cells.
EMBO J. 2021 Apr 28;:e106818

Luethi, A.
Apr 01, 2021
Fustiñana MS, Eichlisberger T, Bouwmeester T, Bitterman Y, Lüthi A

State-dependent encoding of exploratory behaviour in the amygdala.
Nature. 2021 Apr;592(7853):267-271

Peters, A.
Apr 01, 2021
Stäubli A, Peters AH

Mechanisms of maternal intergenerational epigenetic inheritance.
Curr Opin Genet Dev. 2021 Apr;67:151-162

Facility for Advanced Imaging and Microscopy; Chao, J.; Structural Biology
Apr 01, 2021
Bhaskar V, Desogus J, Graff-Meyer A, Schenk AD, Cavadini S, Chao JA

Dynamic association of human Ebp1 with the ribosome.
RNA. 2021 Apr;27(4):411-419

Felsenberg, J.
Apr 01, 2021
Felsenberg J

Changing memories on the fly: the neural circuits of memory re-evaluation in Drosophila melanogaster.
Curr Opin Neurobiol. 2021 Apr;67:190-198

Zenke, F.
Mar 26, 2021
Zenke F, Vogels TP

The Remarkable Robustness of Surrogate Gradient Learning for Instilling Complex Function in Spiking Neural Networks.
Neural Comput. 2021 Mar 26;33(4):899-925

Computational Biology
Mar 18, 2021
Hadziselimovic F, Verkauskas G, Stadler MB

Molecular clues in the regulation of mini-puberty involve neuronal DNA binding transcription factor NHLH2.
Basic Clin Androl. 2021 Mar 18;31(1):6

Chao, J.
Mar 16, 2021
Daniel Mateju Jeffrey A. Chao

Stress granules: Regulators or by-products?
FASEB J, 16 March 2021

Chiquet-Ehrismann, R.; Histology/ Antibody/ FACS; Proteomics and protein analysis
Mar 12, 2021
Hendaoui I, Lahmar A, Campo L, Mebarki S, Bichet S, Hess D, Degen M, Kchir N, Charrada-Ben Farhat L, Hefaiedh R, Ruiz C, Terracciano LM, Tucker RP, Hendaoui L, Chiquet-Ehrismann R

Tenascin-W Is a Novel Stromal Marker in Biliary Tract Cancers.
Front Immunol. 2020;11:630139

Cell sorting (FACS); Computational Biology; Rijli, F.
Mar 01, 2021
Kitazawa T, Machlab D, Joshi O, Maiorano N, Kohler H, Ducret S, Kessler S, Gezelius H, Soneson C, Papasaikas P, López-Bendito G, Stadler MB, Rijli FM

A unique bipartite Polycomb signature regulates stimulus-response transcription during development.
Nat Genet. 2021 Mar;53(3):379-391

Schuebeler, D.; Computational Biology
Mar 01, 2021
Iurlaro M, Stadler MB, Masoni F, Jagani Z, Galli GG, Schübeler D

Mammalian SWI/SNF continuously restores local accessibility to chromatin.
Nat Genet. 2021 Mar;53(3):279-287

Gasser, S.; Proteomics and protein analysis
Feb 18, 2021
Challa K, Schmid CD, Kitagawa S, Cheblal A, Iesmantavicius V, Seeber A, Amitai A, Seebacher J, Hauer MH, Shimada K, Gasser SM

Damage-induced chromatome dynamics link Ubiquitin ligase and proteasome recruitment to histone loss and efficient DNA repair.
Mol Cell. 2021 Feb 18;81(4):811-829.e6

Zenke, F.
Feb 17, 2021
Zenke F, Bohté SM, Clopath C, Comsa IM, Göltz J, Maass W, Masquelier T, Naud R, Neftci EO, Petrovici MA, Scherr F, Goodman DFM

Visualizing a joint future of neuroscience and neuromorphic engineering.
Neuron. 2021 Feb 17;109(4):571-575

Arber, S.
Feb 01, 2021
Ruder L, Schina R, Kanodia H, Valencia-Garcia S, Pivetta C, Arber S

A functional map for diverse forelimb actions within brainstem circuitry.
Nature. 2021 Feb;590(7846):445-450

Computational Biology
Jan 11, 2021
Soneson C, Srivastava A, Patro R, Stadler MB

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data.
PLoS Comput Biol. 2021 Jan 11;17(1):e1008585

Zenke, F.
Jan 8, 2021
Friedemann Zenke, Emre O. Neftci

Brain-Inspired Learning on Neuromorphic Substrates.
Proceedings of the IEEE, 8 Jan 2021

Gasser, S.
Jan 7, 2021
Forey R, Barthe A, Tittel-Elmer M, Wery M, Barrault MB, Ducrot C, Seeber A, Krietenstein N, Szachnowski U, Skrzypczak M, Ginalski K, Rowicka M, Cobb JA, Rando OJ, Soutourina J, Werner M, Dubrana K, Gasser SM, Morillon A, Pasero P, Lengronne A, Poli J

A Role for the Mre11-Rad50-Xrs2 Complex in Gene Expression and Chromosome Organization.
Mol Cell. 2021 Jan 7;81(1):183-197.e6

Gasser, S.
Jan 01, 2021
Padeken J, Methot S, Zeller P, Delaney CE, Kalck V, Gasser SM

Argonaute NRDE-3 and MBT domain protein LIN-61 redundantly recruit an H3K9me3 HMT to prevent embryonic lethality and transposon expression.
Genes Dev. 2021 Jan 1;35(1-2):82-101

Facility for Advanced Imaging and Microscopy; Chao, J.; Giorgetti, L.
Dec 23, 2020
Mateju D, Eichenberger B, Voigt F, Eglinger J, Roth G, Chao JA

Single-Molecule Imaging Reveals Translation of mRNAs Localized to Stress Granules
Cell. 2020 Dec 23;183(7):1801-1812.e13

Keller, G.
Dec 23, 2020
Jordan R, Keller GB

Opposing Influence of Top-down and Bottom-up Input on Excitatory Layer 2/3 Neurons in Mouse Primary Visual Cortex.
Neuron. 2020 Dec 23;108(6):1194-1206.e5

Facility for Advanced Imaging and Microscopy; Liberali, P.
Dec 01, 2020
Zinner M, Lukonin I, Liberali P

Design principles of tissue organisation: How single cells coordinate across scales.
Curr Opin Cell Biol. 2020 Dec;67:37-45

Chao, J.
Dec 01, 2020
Dave P, Chao JA

Insights into mRNA degradation from single-molecule imaging in living cells.
Curr Opin Struct Biol. 2020 Dec;65:89-95

Matthias, P.; Proteomics and protein analysis
Nov 18, 2020
Saito M, Iestamantavicius V, Hess D, Matthias P

Monitoring Acetylation of the RNA Helicase DDX3X, a Protein Critical for Formation of Stress Granules.
Methods Mol Biol. 2021;2209:217-234

Thoma, N.; Structural Biology
Nov 01, 2020
Pathare GR, Decout A, Glück S, Cavadini S, Makasheva K, Hovius R, Kempf G, Weiss J, Kozicka Z, Guey B, Melenec P, Fierz B, Thomä NH, Ablasser A

Structural mechanism of cGAS inhibition by the&nbsp;nucleosome
Nature. 2020 Nov;587(7835):668-672

Gasser, S.
Oct 15, 2020
Cheblal A, Challa K, Seeber A, Shimada K, Yoshida H, Ferreira HC, Amitai A, Gasser SM

DNA Damage-Induced Nucleosome Depletion Enhances Homology Search Independently of Local Break Movement
Mol Cell. 2020 Oct 15;80(2):311-326.e4

Facility for Advanced Imaging and Microscopy; Computational Biology; Liberali, P.
Oct 7, 2020
Lukonin I, Serra D, Challet Meylan L, Volkmann K, Baaten J, Zhao R, Meeusen S, Colman K, Maurer F, Stadler MB, Jenkins J, Liberali P

Phenotypic landscape of intestinal organoid regeneration
Nature. 2020 Oct;586(7828):275-280

Computational Biology
Sep 26, 2020
Soneson C, Marini F, Geier F, Love MI, Stadler MB

ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R.
F1000Res. 2020;9:512

Roska, B.; Computational Biology
Sep 17, 2020
Cowan CS, Renner M, De Gennaro M, Gross-Scherf B, Goldblum D, Hou Y, Munz M, Rodrigues TM, Krol J, Szikra T, Cuttat R, Waldt A, Papasaikas P, Diggelmann R, Patino-Alvarez CP, Galliker P, Spirig SE, Pavlinic D, Gerber-Hollbach N, Schuierer S, Srdanovic A, Balogh M, Panero R, Kusnyerik A, Szabo A, Stadler MB, Orgül S, Picelli S, Hasler PW, Hierlemann A, Scholl HPN, Roma G, Nigsch F, Roska B

Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
Cell. 2020 Sep 17;182(6):1623-1640.e34

Thoma, N.
Aug 01, 2020
Kassube SA, Thomä NH

Structural insights into Fe-S protein biogenesis by the CIA targeting complex.
Nat Struct Mol Biol. 2020 Aug;27(8):735-742

Gasser, S.; Rass, U.; Diss, G.
Jul 27, 2020
Falquet B, Ölmezer G, Enkner F, Klein D, Challa K, Appanah R, Gasser SM, Rass U

Disease-associated DNA2 nuclease-helicase protects cells from lethal chromosome under-replication
Nucleic Acids Res. 2020 Jul 27;48(13):7265-7278

Facility for Advanced Imaging and Microscopy; Grosshans, H.; Tsiairis, C.
Jul 01, 2020
Meeuse MW, Hauser YP, Morales Moya LJ, Hendriks GJ, Eglinger J, Bogaarts G, Tsiairis C, Großhans H

Developmental function and state transitions of a gene expression oscillator in Caenorhabditis elegans
Mol Syst Biol. 2020 Jul;16(7):e9498

Peters, A.; Facility for Advanced Imaging and Microscopy
Jul 01, 2020
Liu Z, Tardat M, Gill ME, Royo H, Thierry R, Ozonov EA, Peters AH

SUMOylated PRC1 controls histone H3.3 deposition and genome integrity of embryonic heterochromatin
EMBO J. 2020 Jul 1;39(13):e103697

Schuebeler, D.; Facility for Advanced Imaging and Microscopy; Thoma, N.; Structural Biology
Jun 26, 2020
Michael AK, Grand RS, Isbel L, Cavadini S, Kozicka Z, Kempf G, Bunker RD, Schenk AD, Graff-Meyer A, Pathare GR, Weiss J, Matsumoto S, Burger L, Schübeler D, Thomä NH

Mechanisms of OCT4-SOX2 motif readout on nucleosomes
Science. 2020 Jun 26;368(6498):1460-1465

Computational Biology; Buehler, M.
Jun 23, 2020
Carl SH, Duempelmann L, Shimada Y, Bühler M

A fully automated deep learning pipeline for high-throughput colony segmentation and classification
Biol Open. 2020 Jun 23;9(6)

Arber, S.; Cell sorting (FACS); Rijli, F.
Jun 16, 2020
Maheshwari U, Kraus D, Vilain N, Holwerda SJB, Cankovic V, Maiorano NA, Kohler H, Satoh D, Sigrist M, Arber S, Kratochwil CF, Di Meglio T, Ducret S, Rijli FM

Postmitotic Hoxa5 Expression Specifies Pontine Neuron Positional Identity and Input Connectivity of Cortical Afferent Subsets
Cell Rep. 2020 Jun 16;31(11):107767

Roska, B.
Jun 5, 2020
Nelidova D, Morikawa RK, Cowan CS, Raics Z, Goldblum D, Scholl HPN, Szikra T, Szabo A, Hillier D, Roska B

Restoring light sensitivity using tunable near-infrared sensors
Science. 2020 Jun 5;368(6495):1108-1113

Schuebeler, D.; Peters, A.; Functional Genomics; Computational Biology
May 29, 2020
Ginno PA, Gaidatzis D, Feldmann A, Hoerner L, Imanci D, Burger L, Zilbermann F, Peters AHFM, Edenhofer F, Smallwood SA, Krebs AR, Schübeler D

A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity
Nat Commun. 2020 May 29;11(1):2680

Thoma, N.; Structural Biology
May 26, 2020
Schenk AD, Cavadini S, Thomä NH, Genoud C

Live Analysis and Reconstruction of Single-Particle Cryo-Electron Microscopy Data with CryoFLARE
J Chem Inf Model. 2020 May 26;60(5):2561-2569

Gasser, S.; Grosshans, H.; Computational Biology
May 01, 2020
Mattout A, Gaidatzis D, Padeken J, Schmid CD, Aeschimann F, Kalck V, Gasser SM

LSM2-8 and XRN-2 contribute to the silencing of H3K27me3-marked genes through targeted RNA decay
Nat Cell Biol. 2020 May;22(5):579-590

Gasser, S.; Computational Biology
Apr 29, 2020
Mattout A, Gaidatzis D, Kalck V, Gasser SM

A Nuclear RNA Degradation Pathway Helps Silence Polycomb/H3K27me3-Marked Loci in Caenorhabditis elegans.
Cold Spring Harb Symp Quant Biol. 2020 Apr 29

Facility for Advanced Imaging and Microscopy; Computational Biology; Chao, J.; Structural Biology
Apr 7, 2020
Bhaskar V, Graff-Meyer A, Schenk AD, Cavadini S, von Loeffelholz O, Natchiar SK, Artus-Revel CG, Hotz HR, Bretones G, Klaholz BP, Chao JA

Dynamics of uS19 C-Terminal Tail during the Translation Elongation Cycle in Human Ribosomes
Cell Rep. 2020 Apr 7;31(1):107473

Gasser, S.
Apr 01, 2020
Harr JC, Schmid CD, Muñoz-Jiménez C, Romero-Bueno R, Kalck V, Gonzalez-Sandoval A, Hauer MH, Padeken J, Askjaer P, Mattout A, Gasser SM

Loss of an H3K9me anchor rescues laminopathy-linked changes in nuclear organization and muscle function in an Emery-Dreifuss muscular dystrophy model
Genes Dev. 2020 Apr 1;34(7-8):560-579

Grosshans, H.
Mar 30, 2020
Azzi C, Aeschimann F, Neagu A, Großhans H

A branched heterochronic pathway directs juvenile-to-adult transition through two LIN-29 isoforms
Elife. 2020 Mar 30;9

Proteomics and protein analysis; Buehler, M.
Mar 19, 2020
Tuck AC, Rankova A, Arpat AB, Liechti LA, Hess D, Iesmantavicius V, Castelo-Szekely V, Gatfield D, Bühler M

Mammalian RNA Decay Pathways Are Highly Specialized and Widely Linked to Translation
Mol Cell. 2020 Mar 19;77(6):1222-1236.e13

Friedrich, R.
Mar 2, 2020
Huang KH, Rupprecht P, Frank T, Kawakami K, Bouwmeester T, Friedrich RW

A virtual reality system to analyze neural activity and behavior in adult zebrafish.
Nat Methods. 2020 Mar;17(3):343-351

Friedrich, R.
Mar 01, 2020
Wanner AA, Friedrich RW

Whitening of odor representations by the wiring diagram of the olfactory bulb
Nat Neurosci. 2020 Mar;23(3):433-442

Buehler, M.
Mar 01, 2020
Duempelmann L, Skribbe M, Bühler M

Small RNAs in the Transgenerational Inheritance of Epigenetic Information
Trends Genet. 2020 Mar;36(3):203-214

Giorgetti, L.
Feb 20, 2020
McCord RP, Kaplan N, Giorgetti L

Chromosome Conformation Capture and Beyond: Toward an Integrative View of Chromosome Structure and Function
Mol Cell. 2020 Feb 20;77(4):688-708

Proteomics and protein analysis; Facility for Advanced Imaging and Microscopy; Computational Biology; Betschinger, J.
Jan 15, 2020
Mayer D, Stadler MB, Rittirsch M, Hess D, Lukonin I, Winzi M, Smith A, Buchholz F, Betschinger J

Zfp281 orchestrates interconversion of pluripotent states by engaging Ehmt1 and Zic2
EMBO J. 2020 Jan 15;39(2):e102591

Computational Biology
Jan 01, 2020
Hadziselimovic F, Verkauskas G, Vincel B, Stadler MB

Testicular expression of long non-coding RNAs is affected by curative GnRHa treatment of cryptorchidism
Basic Clin Androl. 2019;29:18

Bleichert, F.
Dec 01, 2019
Bleichert F

Mechanisms of replication origin licensing: a structural perspective
Curr Opin Struct Biol. 2019 Dec;59:195-204

Zenke, F.
Nov 01, 2019
Neftci Emre O, Mostafa Hesham, Zenke Friedemann

Surrogate Gradient Learning in Spiking Neural Networks: Bringing the Power of Gradient-based optimization to spiking neural networks
IEEE Signal Processing Magazine (Volume: 36 , Issue: 6 , Nov. 2019)

Tsiairis, C.
Nov 01, 2019
Vogg MC, Galliot B, Tsiairis CD

Model systems for regeneration: Hydra
Development. 2019 Nov 1;146(21)

Luethi, A.
Nov 01, 2019
Krabbe S, Paradiso E, d'Aquin S, Bitterman Y, Courtin J, Xu C, Yonehara K, Markovic M, Müller C, Eichlisberger T, Gründemann J, Ferraguti F, Lüthi A

Adaptive disinhibitory gating by VIP interneurons permits associative learning.
Nat Neurosci. 2019 Nov;22(11):1834-1843

Friedrich, R.
Nov 01, 2019
Frank T, Mönig NR, Satou C, Higashijima SI, Friedrich RW

Associative conditioning remaps odor representations and modifies inhibition in a higher olfactory brain area
Nat Neurosci. 2019 Nov;22(11):1844-1856

Gasser, S.; Proteomics and protein analysis; Protein structure
Oct 15, 2019
Deshpande I, Keusch JJ, Challa K, Iesmantavicius V, Gasser SM, Gut H

The Sir4 H-BRCT domain interacts with phospho-proteins to sequester and repress yeast heterochromatin
EMBO J. 2019 Oct 15;38(20):e101744

Rijli, F.
Sep 26, 2019
Kratochwil CF, Rijli FM

The Cre/Lox System to Assess the Development of the Mouse Brain.
Methods Mol Biol. 2020;2047:491-512

Bleichert, F.
Sep 12, 2019
Ekundayo B, Bleichert F

Origins of DNA replication
PLoS Genet. 2019 Sep;15(9):e1008320

Buehler, M.
Sep 5, 2019
Kaaij LJT, Mohn F, van der Weide RH, de Wit E, Bühler M

The ChAHP Complex Counteracts Chromatin Looping at CTCF Sites that Emerged from SINE Expansions in Mouse.
Cell. 2019 Sep 5;178(6):1437-1451.e14

Caroni, P.
Sep 5, 2019
Mukherjee A, Carvalho F, Eliez S, Caroni P

Long-Lasting Rescue of Network and Cognitive Dysfunction in a Genetic Schizophrenia Model
Cell. 2019 Sep 5;178(6):1387-1402.e14

Grosshans, H.; Computational Biology; Buehler, M.
Sep 01, 2019
Welte T, Tuck AC, Papasaikas P, Carl SH, Flemr M, Knuckles P, Rankova A, Bühler M, Großhans H

The RNA hairpin binder TRIM71 modulates alternative splicing by repressing MBNL1
Genes Dev. 2019 Sep 1;33(17-18):1221-1235

Chiquet-Ehrismann, R.
Aug 30, 2019
Schnellmann R, Chiquet-Ehrismann R

Preparation and Application of a Decellularized Extracellular Matrix for Identification of ADAMTS Substrates.
Methods Mol Biol. 2020;2043:275-284

Facility for Advanced Imaging and Microscopy; Chao, J.
Aug 14, 2019
Voigt F, Eglinger J, Chao JA

Quantification of mRNA Turnover in Living Cells: A Pipeline for TREAT Data Analysis.
Methods Mol Biol. 2019;2038:75-88

Giorgetti, L.
Aug 10, 2019
Tiana G, Giorgetti L

Coarse Graining of a Giant Molecular System: The Chromatin Fiber.
Methods Mol Biol. 2019;2022:399-411

Peters, A.; Facility for Advanced Imaging and Microscopy; Thoma, N.; Structural Biology
Aug 8, 2019
Rabl J, Bunker RD, Schenk AD, Cavadini S, Gill ME, Abdulrahman W, Andrés-Pons A, Luijsterburg MS, Ibrahim AFM, Branigan E, Aguirre JD, Marceau AH, Guérillon C, Bouwmeester T, Hassiepen U, Peters AHFM, Renatus M, Gelman L, Rubin SM, Mailand N, van Attikum H, Hay RT, Thomä NH

Structural Basis of BRCC36 Function in DNA Repair and Immune Regulation
Mol Cell. 2019 Aug 8;75(3):483-497.e9

Schuebeler, D.; Roska, B.
Aug 01, 2019
Jüttner J, Szabo A, Gross-Scherf B, Morikawa RK, Rompani SB, Hantz P, Szikra T, Esposti F, Cowan CS, Bharioke A, Patino-Alvarez CP, Keles Ö, Kusnyerik A, Azoulay T, Hartl D, Krebs AR, Schübeler D, Hajdu RI, Lukats A, Nemeth J, Nagy ZZ, Wu KC, Wu RH, Xiang L, Fang XL, Jin ZB, Goldblum D, Hasler PW, Scholl HPN, Krol J, Roska B

Targeting neuronal and glial cell types with synthetic promoter AAVs in mice, non-human primates and humans
Nat Neurosci. 2019 Aug;22(8):1345-1356

Caroni, P.
Jul 12, 2019
Chowdhury A, Caroni P

Author Correction: Time units for learning involving maintenance of system-wide cFos expression in neuronal assemblies
Nat Commun. 2019 Jul 12;10(1):3083

Caroni, P.
Jul 12, 2019
Mukherjee A, Caroni P

Author Correction: Infralimbic cortex is required for learning alternatives to prelimbic promoted associations through reciprocal connectivity.
Nat Commun. 2019 Jul 12;10(1):3082

Caroni, P.
Jul 9, 2019
Tripodi M, Bhandari K, Chowdhury A, Mukherjee A, Caroni P

Parvalbumin Interneuron Plasticity for Consolidation of Reinforced Learning.
Cold Spring Harb Symp Quant Biol. 2019 Jul 9

Arber, S.
Jul 8, 2019
Ruder L, Arber S

Brainstem Circuits Controlling Action Diversification
Annu Rev Neurosci. 2019 Jul 8;42:485-504

Schuebeler, D.; Thoma, N.; Structural Biology
Jul 01, 2019
Matsumoto S, Cavadini S, Bunker RD, Grand RS, Potenza A, Rabl J, Yamamoto J, Schenk AD, Schübeler D, Iwai S, Sugasawa K, Kurumizaka H, Thomä NH

DNA damage detection in nucleosomes involves DNA register shifting
Nature. 2019 Jul;571(7763):79-84

Liberali, P.
Jun 27, 2019
Mayr U, Serra D, Liberali P

Exploring single cells in space and time during tissue development, homeostasis and regeneration
Development. 2019 Jun 27;146(12)

Proteomics and protein analysis; Thoma, N.; Rass, U.
Jun 10, 2019
Fontana GA, Hess D, Reinert JK, Mattarocci S, Falquet B, Klein D, Shore D, Thomä NH, Rass U

Rif1 S-acylation mediates DNA double-strand break repair at the inner nuclear membrane
Nat Commun. 2019 Jun 10;10(1):2535

Schuebeler, D.; Proteomics and protein analysis; Functional Genomics; Giorgetti, L.
Jun 01, 2019
Redolfi J, Zhan Y, Valdes-Quezada C, Kryzhanovska M, Guerreiro I, Iesmantavicius V, Pollex T, Grand RS, Mulugeta E, Kind J, Tiana G, Smallwood SA, de Laat W, Giorgetti L

DamC reveals principles of chromatin folding in vivo without crosslinking and ligation
Nat Struct Mol Biol. 2019 Jun;26(6):471-480

Gasser, S.
Jun 01, 2019
Hurst V, Shimada K, Gasser SM

Nuclear Actin and Actin-Binding Proteins in DNA Repair
Trends Cell Biol. 2019 Jun;29(6):462-476

Gasser, S.; Computational Biology
May 22, 2019
Cabianca DS, Muñoz-Jiménez C, Kalck V, Gaidatzis D, Padeken J, Seeber A, Askjaer P, Gasser SM

Active chromatin marks drive spatial sequestration of heterochromatin in C. elegans nuclei
Nature. 2019 May;569(7758):734-739

Buehler, M.
May 2, 2019
Duempelmann L, Mohn F, Shimada Y, Oberti D, Andriollo A, Lochs S, Bühler M

Inheritance of a Phenotypically Neutral Epimutation Evokes Gene Silencing in Later Generations
Mol Cell. 2019 May 2;74(3):534-541.e4

Facility for Advanced Imaging and Microscopy; Chao, J.
May 01, 2019
Voigt F, Gerbracht JV, Boehm V, Horvathova I, Eglinger J, Chao JA, Gehring NH

Detection and quantification of RNA decay intermediates using XRN1-resistant reporter transcripts
Nat Protoc. 2019 May;14(5):1603-1633

Peters, A.; Facility for Advanced Imaging and Microscopy; Computational Biology; Electron microscopy; Liberali, P.
May 01, 2019
Serra D, Mayr U, Boni A, Lukonin I, Rempfler M, Challet Meylan L, Stadler MB, Strnad P, Papasaikas P, Vischi D, Waldt A, Roma G, Liberali P

Self-organization and symmetry breaking in intestinal organoid development
Nature. 2019 May;569(7754):66-72

Schuebeler, D.; Computational Biology
May 01, 2019
Barisic D, Stadler MB, Iurlaro M, Schübeler D

Mammalian ISWI and SWI/SNF selectively mediate binding of distinct transcription factors
Nature. 2019 May;569(7754):136-140

Hohn, B.
Apr 29, 2019
Hohn B

From Bacteriophage to Plant Genetics
Annu Rev Plant Biol. 2019 Apr 29;70:1-22

Luethi, A.
Apr 19, 2019
Gründemann J, Bitterman Y, Lu T, Krabbe S, Grewe BF, Schnitzer MJ, Lüthi A

Amygdala ensembles encode behavioral states
Science. 2019 Apr 19;364(6437)

Gasser, S.
Apr 19, 2019
Hurst V, Gasser SM

The study of protein recruitment to laser-induced DNA lesions can be distorted by photoconversion of the DNA binding dye Hoechst.
F1000Res. 2019;8:104

Arber, S.
Apr 2, 2019
Takeoka A, Arber S

Functional Local Proprioceptive Feedback Circuits Initiate and Maintain Locomotor Recovery after Spinal Cord Injury
Cell Rep. 2019 Apr 2;27(1):71-85.e3

Grosshans, H.
Apr 01, 2019
Aeschimann F, Neagu A, Rausch M, Großhans H

let-7 coordinates the transition to adulthood through a single primary and four secondary targets
Life Sci Alliance. 2019 Apr;2(2)

Gasser, S.; Grosshans, H.; C. elegans facility
Apr 01, 2019
Padeken J, Zeller P, Towbin B, Katic I, Kalck V, Methot SP, Gasser SM

Synergistic lethality between BRCA1 and H3K9me2 loss reflects satellite derepression
Genes Dev. 2019 Apr 1;33(7-8):436-451

Schuebeler, D.
Apr 01, 2019
Hartl D, Krebs AR, Grand RS, Baubec T, Isbel L, Wirbelauer C, Burger L, Schübeler D

CG dinucleotides enhance promoter activity independent of DNA methylation
Genome Res. 2019 Apr;29(4):554-563

Liberali, P.
Apr 01, 2019
Xavier da Silveira Dos Santos A, Liberali P

From single cells to tissue self-organization
FEBS J. 2019 Apr;286(8):1495-1513

Cell sorting (FACS); Computational Biology; Bentires-Alj, M.
Mar 13, 2019
Obradovic MMS, Hamelin B, Manevski N, Couto JP, Sethi A, Coissieux MM, Münst S, Okamoto R, Kohler H, Schmidt A, Bentires-Alj M

Glucocorticoids promote breast cancer metastasis
Nature. 2019 Mar;567(7749):540-544

Chao, J.; Giorgetti, L.
Mar 7, 2019
Wilbertz JH, Voigt F, Horvathova I, Roth G, Zhan Y, Chao JA

Single-Molecule Imaging of mRNA Localization and Regulation during the Integrated Stress Response
Mol Cell. 2019 Mar 7;73(5):946-958.e7

Gasser, S.; C. elegans facility
Mar 4, 2019
Delaney CE, Methot SP, Guidi M, Katic I, Gasser SM, Padeken J

Heterochromatic foci and transcriptional repression by an unstructured MET-2/SETDB1 co-factor LIN-65
J Cell Biol. 2019 Mar 4;218(3):820-838

Roska, B.
Mar 01, 2019
Roska B

The first steps in vision: cell types, circuits, and repair
EMBO Mol Med. 2019 Mar;11(3)

Proteomics and protein analysis; Functional Genomics; Computational Biology; Betschinger, J.
Feb 7, 2019
Villegas F, Lehalle D, Mayer D, Rittirsch M, Stadler MB, Zinner M, Olivieri D, Vabres P, Duplomb-Jego L, De Bont ESJM, Duffourd Y, Duijkers F, Avila M, Geneviève D, Houcinat N, Jouan T, Kuentz P, Lichtenbelt KD, Thauvin-Robinet C, St-Onge J, Thevenon J, van Gassen KLI, van Haelst M, van Koningsbruggen S, Hess D, Smallwood SA, Rivière JB, Faivre L, Betschinger J

Lysosomal Signaling Licenses Embryonic Stem Cell Differentiation via Inactivation of Tfe3
Cell Stem Cell. 2019 Feb 7;24(2):257-270.e8

Matthias, P.; Proteomics and protein analysis; Facility for Advanced Imaging and Microscopy
Jan 01, 2019
Saito M, Hess D, Eglinger J, Fritsch AW, Kreysing M, Weinert BT, Choudhary C, Matthias P

Acetylation of intrinsically disordered regions regulates phase separation
Nat Chem Biol. 2019 Jan;15(1):51-61

Roska, B.
Dec 5, 2018
Macé É, Montaldo G, Trenholm S, Cowan C, Brignall A, Urban A, Roska B

Whole-Brain Functional Ultrasound Imaging Reveals Brain Modules for Visuomotor Integration
Neuron. 2018 Dec 5;100(5):1241-1251.e7

Chao, J.
Dec 3, 2018
Chao JA, Lionnet T

Imaging the Life and Death of mRNAs in Single Cells
Cold Spring Harb Perspect Biol. 2018 Dec 3;10(12)

Rijli, F.
Dec 01, 2018
Kitazawa T, Rijli FM

Barrelette map formation in the prenatal mouse brainstem
Curr Opin Neurobiol. 2018 Dec;53:210-219

Protein structure; Chao, J.
Dec 01, 2018
Jia M, Gut H, Chao JA

Structural basis of IMP3 RRM12 recognition of RNA
RNA. 2018 Dec;24(12):1659-1666

Gasser, S.
Nov 23, 2018
Seeber A, Hauer MH, Gasser SM

Chromosome Dynamics in Response to DNA Damage
Annu Rev Genet. 2018 Nov 23;52:295-319

Friedrich, R.
Nov 7, 2018
Rupprecht P, Friedrich RW

Precise Synaptic Balance in the Zebrafish Homolog of Olfactory Cortex
Neuron. 2018 Nov 7;100(3):669-683.e5

Thoma, N.
Nov 2, 2018
Sievers QL, Petzold G, Bunker RD, Renneville A, Slabicki M, Liddicoat BJ, Abdulrahman W, Mikkelsen T, Ebert BL, Thomä NH

Defining the human C2H2 zinc finger degrome targeted by thalidomide analogs through CRBN
Science. 2018 Nov 2;362(6414)

Friedrich, R.
Nov 01, 2018
Namekawa I, Moenig NR, Friedrich RW

Rapid olfactory discrimination learning in adult zebrafish
Exp Brain Res. 2018 Nov;236(11):2959-2969

Arber, S.
Oct 24, 2018
Ferreira-Pinto MJ, Ruder L, Capelli P, Arber S

Connecting Circuits for Supraspinal Control of Locomotion.
Neuron. 2018 Oct 24;100(2):361-374

Keller, G.
Oct 24, 2018
Keller GB, Mrsic-Flogel TD

Predictive Processing: A Canonical Cortical Computation
Neuron. 2018 Oct 24;100(2):424-435

Friedrich, R.; Electron microscopy
Oct 17, 2018
Genoud C, Titze B, Graff-Meyer A, Friedrich RW

Fast Homogeneous En Bloc Staining of Large Tissue Samples for Volume Electron Microscopy.
Front Neuroanat. 2018;12:76

Caroni, P.
Oct 8, 2018
Chowdhury A, Caroni P

Time units for learning involving maintenance of system-wide cFos expression in neuronal assemblies
Nat Commun. 2018 Oct 8;9(1):4122

Schuebeler, D.; Proteomics and protein analysis
Oct 2, 2018
Ginno PA, Burger L, Seebacher J, Iesmantavicius V, Schübeler D

Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape
Nat Commun. 2018 Oct 2;9(1):4048

Matthias, P.
Sep 21, 2018
Song S, Matthias PD

The Transcriptional Regulation of Germinal Center Formation
Front Immunol. 2018;9:2026

Arber, S.; Keller, G.
Sep 5, 2018
Heindorf M, Arber S, Keller GB

Mouse Motor Cortex Coordinates the Behavioral Response to Unpredicted Sensory Feedback
Neuron. 2018 Sep 5;99(5):1040-1054.e5

Gasser, S.
Sep 4, 2018
Marcomini I, Shimada K, Delgoshaie N, Yamamoto I, Seeber A, Cheblal A, Horigome C, Naumann U, Gasser SM

Asymmetric Processing of DNA Ends at a Double-Strand Break Leads to Unconstrained Dynamics and Ectopic Translocation
Cell Rep. 2018 Sep 4;24(10):2614-2628.e4

Buehler, M.
Sep 01, 2018
Knuckles P, Bühler M

Adenosine methylation as a molecular imprint defining the fate of RNA.
FEBS Lett. 2018 Sep;592(17):2845-2859

Friedrich, R.; Electron microscopy
Aug 16, 2018
Titze B, Genoud C, Friedrich RW

SBEMimage: Versatile Acquisition Control Software for Serial Block-Face Electron Microscopy. Front Neural Circuits
Front Neural Circuits. 2018;12:54

Transgenic mice production; Peters, A.; Computational Biology
Aug 01, 2018
Stavropoulou V, Almosailleakh M, Royo H, Spetz JF, Juge S, Brault L, Kopp P, Iacovino M, Kyba M, Tzankov A, Stadler MB, Cazzaniga G, Peters AHFM, Schwaller J

A Novel Inducible Mouse Model of <em>MLL-ENL</em>-driven Mixed-lineage Acute Leukemia
Hemasphere. 2018 Aug;2(4):e51

Buehler, M.
Aug 01, 2018
Tuck AC, Natarajan KN, Rice GM, Borawski J, Mohn F, Rankova A, Flemr M, Wenger A, Nutiu R, Teichmann S, Bühler M

Distinctive features of lincRNA gene expression suggest widespread RNA-independent functions
Life Sci Alliance. 2018 Aug;1(4):e201800124

Computational Biology
Aug 01, 2018
Hadziselimovic F, Cathomas G, Verkauskas G, Dasevicius D, Stadler MB

PRDM Histone Methyltransferase mRNA Levels Increase in Response to Curative Hormone Treatment for Cryptorchidism-Dependent Male Infertility
Genes (Basel). 2018 Aug 1;9(8)

Peters, A.
Jul 30, 2018
Mark E.Gill, Antoine H.F.M.Peters

Chromatin Structure, Composition, and Function During Spermatogenesis
Encyclopedia of Reproduction (Second Edition) Volume 3, 2018, Pages 85-89

Functional Genomics
Jul 17, 2018
Peat JR, Smallwood SA

Low Input Whole-Genome Bisulfite Sequencing Using a Post-Bisulfite Adapter Tagging Approach.
Methods Mol Biol. 2018;1708:161-169

Ciosk, R.
Jul 16, 2018
Gutnik S, Thomas Y, Guo Y, Stoecklin J, Neagu A, Pintard L, Merlet J, Ciosk R

PRP-19, a conserved pre-mRNA processing factor and E3 ubiquitin ligase, inhibits the nuclear accumulation of GLP-1/Notch intracellular domain
Biol Open. 2018 Jul 16;7(7)

Caroni, P.
Jul 13, 2018
Mukherjee A, Caroni P

Infralimbic cortex is required for learning alternatives to prelimbic promoted associations through reciprocal connectivity.
Nat Commun. 2018 Jul 13;9(1):2727

Roska, B.
Jul 11, 2018
Drinnenberg A, Franke F, Morikawa RK, Jüttner J, Hillier D, Hantz P, Hierlemann A, Azeredo da Silveira R, Roska B

How Diverse Retinal Functions Arise from Feedback at the First Visual Synapse
Neuron. 2018 Jul 11;99(1):117-134.e11

Luethi, A.
Jul 10, 2018
Lavi K, Jacobson GA, Rosenblum K, Lüthi A

Encoding of Conditioned Taste Aversion in Cortico-Amygdala Circuits
Cell Rep. 2018 Jul 10;24(2):278-283

Hynes, N.; Emeritus; Computational Biology
Jul 01, 2018
Gattelli A, García Solá ME, Roloff TC, Cardiff RD, Kordon EC, Chodosh LA, Hynes NE

Chronic expression of wild-type Ret receptor in the mammary gland induces luminal tumors that are sensitive to Ret inhibition
Oncogene. 2018 Jul;37(29):4046-4054

Chiquet-Ehrismann, R.; Proteomics and protein analysis; Emeritus
Jul 01, 2018
Schnellmann R, Sack R, Hess D, Annis DS, Mosher DF, Apte SS, Chiquet-Ehrismann R

A Selective Extracellular Matrix Proteomics Approach Identifies Fibronectin Proteolysis by A Disintegrin-like and Metalloprotease Domain with Thrombospondin Type 1 Motifs (ADAMTS16) and Its Impact on Spheroid Morphogenesis
Mol Cell Proteomics. 2018 Jul;17(7):1410-1425

Bleichert, F.
Jun 26, 2018
Bleichert F, Leitner A, Aebersold R, Botchan MR, Berger JM

Conformational control and DNA-binding mechanism of the metazoan origin recognition complex
Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):E5906-E5915

Friedrich, R.; Electron microscopy
Jun 15, 2018
Miyasaka N, Wanner AA, Li J, Mack-Bucher J, Genoud C, Yoshihara Y, Friedrich RW

Functional development of the olfactory system in zebrafish
Mech Dev. 2013 Jun-Aug;130(6-8):336-46

Thoma, N.
Jun 01, 2018
Bunker RD

Protein Crystallography: Challenges and Practical Solutions. Chapter 7: Structure Determination and Refinement of Large Macromolecular Assemblies at Low Resolution
Royal Society of Chemistry

Proteomics and protein analysis; Computational Biology; Thoma, N.; Buehler, M.; Betschinger, J.
May 23, 2018
Ostapcuk V, Mohn F, Carl SH, Basters A, Hess D, Iesmantavicius V, Lampersberger L, Flemr M, Pandey A, Thomä NH, Betschinger J, Bühler M

Activity-dependent neuroprotective protein recruits HP1 and CHD4 to control lineage-specifying genes.
Nature. 2018 May;557(7707):739-743